Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 0.0e+00 1619.8 807 100.0
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 0.0e+00 1280.0 809 79.0
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 0.0e+00 1154.4 808 71.5
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 0.0e+00 1092.0 807 68.8
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 9.6e-307 1056.6 810 64.9
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 812 63.2
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 2.6e-296 1021.9 813 62.1
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 7.6e-296 1020.4 814 62.8
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 809 63.0
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 8.5e-295 1016.9 809 63.2
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 7.2e-294 1013.8 809 62.5
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.8e-292 1009.2 815 62.0
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.0e-292 1008.4 815 62.3
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 6.7e-292 1007.3 815 62.3
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.2e-290 1002.3 812 61.8
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 5.9e-288 994.2 815 62.2
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 7.2e-286 987.3 814 61.3
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.6e-285 986.1 819 60.7
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 2.7e-285 985.3 812 61.0
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 1.0e-284 983.4 816 60.7
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.4e-284 983.0 817 60.6
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.4e-284 983.0 813 60.4
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 3.3e-283 978.4 816 60.5
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.3e-282 976.5 814 60.3
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.3e-282 976.5 816 60.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.2e-282 975.7 814 60.2
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 3.1e-281 971.8 811 61.0
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 5.3e-281 971.1 809 60.3
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 6.9e-281 970.7 809 60.6
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.0e-280 969.1 816 59.7
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 3.4e-280 968.4 815 59.5
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.7e-279 966.1 849 57.8
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 1.7e-279 966.1 878 57.2
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 8.5e-279 963.8 811 59.3
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.1e-278 963.4 811 59.7
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 1.9e-278 962.6 813 59.0
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 7.2e-278 960.7 809 59.6
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.2e-277 959.9 809 58.6
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.7e-277 958.7 811 60.2
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 6.1e-277 957.6 744 65.7
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 7.9e-277 957.2 810 59.3
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 2.0e-275 952.6 811 59.8
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 2.0e-275 952.6 811 58.8
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 7.4e-275 950.7 808 59.7
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.8e-274 948.7 812 59.7
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 8.2e-274 947.2 822 58.2
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.4e-273 946.4 815 59.8
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 1.8e-273 946.0 811 57.3
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 4.5e-272 941.4 814 58.6
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.5e-272 941.4 813 59.7
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 2.2e-271 939.1 813 58.5
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 9.4e-270 933.7 806 58.3
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 9.4e-270 933.7 814 57.2
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 3.6e-269 931.8 787 60.1
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 4.4e-267 924.9 816 57.0
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.7e-266 922.9 809 58.1
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 3.7e-266 921.8 809 57.4
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.8e-266 921.4 874 55.6
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 9.1e-265 917.1 816 57.0
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.6e-264 916.4 808 56.7
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.6e-264 916.4 811 56.1
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 2.7e-264 915.6 808 57.7
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.7e-264 915.6 823 56.5
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 3.5e-264 915.2 835 58.8
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 2.9e-263 912.1 811 57.2
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 8.5e-263 910.6 816 56.5
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 8.5e-263 910.6 815 56.7
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 5.5e-262 907.9 813 58.2
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 5.5e-262 907.9 825 57.2
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 9.4e-262 907.1 817 56.5
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 9.4e-262 907.1 812 56.8
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.0e-260 903.7 811 58.4
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.0e-260 903.7 808 56.4
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 3.0e-260 902.1 815 55.3
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.6e-259 899.0 811 58.0
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 7.5e-259 897.5 814 57.9
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.2e-258 896.0 825 54.8
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 4.8e-258 894.8 624 69.1
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 2.4e-257 892.5 807 55.6
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 2.7e-256 889.0 814 56.0
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.3e-255 886.7 810 55.3
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.7e-255 886.3 814 55.8
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.7e-255 886.3 822 55.6
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.3e-255 885.9 814 55.8
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 6.5e-255 884.4 814 55.7
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 2.5e-254 882.5 838 55.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 8.8e-252 874.0 807 55.4
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 3.5e-248 862.1 824 54.5
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.7e-247 859.8 810 54.3
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 2.6e-243 845.9 813 54.7
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.6e-240 836.6 819 53.6
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 5.8e-235 818.1 824 51.8
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 9.2e-233 810.8 812 52.7
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.3e-231 806.2 811 51.8
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 3.9e-231 805.4 813 50.6
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 5.2e-228 795.0 814 50.6
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 3.6e-221 772.3 583 65.5
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.9e-210 736.1 562 64.4
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 6.2e-205 718.4 885 46.2
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.7e-200 703.0 810 46.4
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 5.7e-182 642.1 811 45.0
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 4.8e-181 639.0 828 43.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 6.9e-180 635.2 814 44.8
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.3e-178 630.9 846 42.6
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 7.2e-177 625.2 460 66.5
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 9.1e-164 581.6 818 42.5
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 2.3e-151 540.4 840 38.3
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 7.7e-147 525.4 812 40.0
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.6e-144 517.7 580 48.8
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.5e-142 511.1 862 38.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 5.4e-140 502.7 675 43.0
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 2.3e-135 487.3 818 39.4
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 4.1e-132 476.5 830 37.2
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 3.5e-131 473.4 813 38.5
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.9e-131 472.6 475 53.7
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.5e-121 441.4 337 62.6
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.7e-117 427.9 845 34.0
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.3e-90 338.6 389 47.3
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 6.2e-88 329.7 697 30.0
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.1e-84 318.9 409 43.8
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 5.3e-63 246.9 719 27.8
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.8e-58 231.9 156 70.5
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 6.3e-56 223.4 321 42.7
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 4.1e-55 220.7 273 46.5
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 5.9e-54 216.9 273 46.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.5e-49 202.2 839 24.2
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.7e-48 197.6 631 29.3
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.9e-45 188.0 154 61.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 6.1e-43 180.3 205 50.2
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.0e-42 179.5 206 49.0
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.6e-33 148.3 104 66.3
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 5.0e-29 134.0 133 54.1
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 3.4e-25 121.3 143 51.7
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 4.4e-25 120.9 63 90.5
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 4.1e-23 114.4 93 59.1
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.2e-16 92.0 61 67.2
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.0e-13 80.9 67 58.2
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-12 79.3 119 37.8
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 1.4e-10 72.8 107 43.9
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 6.8e-10 70.5 105 40.0
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 8.9e-10 70.1 46 69.6
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 2.0e-09 68.9 46 67.4
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.2e-06 59.7 97 36.1
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 7.8e-06 57.0 48 45.8


User provided reference genes

Program Settings