Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1762.3 860 100.0
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1491.1 862 83.9
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1454.9 882 79.9
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1452.6 874 80.7
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1402.9 863 78.6
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1364.0 865 76.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 863 69.9
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 863 69.2
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 869 69.3
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1237.2 866 69.3
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1234.6 865 69.9
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1232.6 865 68.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 863 69.1
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 864 69.9
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1231.5 869 68.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 865 68.3
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 871 68.4
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 871 68.0
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 867 69.1
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1223.4 864 68.3
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 867 68.7
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 863 68.1
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 863 67.8
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 867 68.7
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 863 67.9
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 865 68.9
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 865 69.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1219.1 869 67.5
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1218.8 863 68.0
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1217.6 875 67.7
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1217.2 866 68.2
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1216.8 869 67.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 866 67.8
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 867 68.2
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1211.1 865 68.2
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1210.3 861 68.2
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 872 67.9
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1208.4 871 68.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 865 67.7
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1205.7 865 68.7
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1203.7 869 67.0
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1203.7 868 67.1
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1203.3 876 66.6
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1202.2 865 67.4
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 866 66.9
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 866 67.8
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 869 66.6
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1196.4 862 66.7
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1196.0 858 67.4
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1196.0 864 67.7
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1194.1 864 67.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1194.1 863 67.3
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1193.7 862 66.8
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 865 66.9
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1193.3 866 67.2
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 864 66.1
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1189.5 863 66.2
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1189.5 864 67.0
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1189.5 865 66.2
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1188.7 864 66.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1187.9 863 66.0
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1186.8 857 66.9
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 863 65.7
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1182.5 876 65.6
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1181.4 863 65.4
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1181.0 863 66.4
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1180.2 863 66.0
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1180.2 872 66.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1176.8 888 65.0
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1174.1 863 65.9
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1172.5 865 65.5
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1172.5 866 65.4
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1172.5 863 65.2
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1169.5 873 65.4
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1169.1 867 65.4
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1168.7 867 65.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1168.7 864 66.3
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1168.3 867 65.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1167.9 863 67.0
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1167.5 863 65.6
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1166.8 863 65.2
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 863 65.5
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1164.8 866 65.2
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1158.7 869 65.0
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1151.7 826 68.2
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1151.3 860 65.5
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1150.2 862 65.3
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1144.4 860 64.8
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1099.0 864 62.2
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1077.0 855 62.1
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 6.6e-306 1053.9 860 61.4
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 8.4e-301 1036.9 743 69.3
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 7.9e-299 1030.4 865 58.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 2.3e-290 1002.3 861 55.7
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 5.1e-290 1001.1 691 69.2
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 4.1e-287 991.5 855 56.7
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.2e-284 981.9 647 71.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 9.3e-284 980.3 856 59.0
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.3e-280 969.9 866 54.6
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 2.4e-279 965.7 690 67.5
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 3.4e-270 935.3 869 52.5
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.2e-206 724.2 759 48.6
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.5e-153 547.7 477 58.3
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.0e-152 545.0 393 67.9
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.5e-135 487.3 461 53.6
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.2e-113 415.2 360 59.2
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.8e-85 321.6 306 56.2
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.1e-69 267.7 204 64.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.1e-66 256.5 168 70.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 2.9e-51 208.0 172 61.0
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 6.9e-45 186.8 174 53.4
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 3.0e-40 171.4 195 49.7
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.0e-35 156.4 216 41.7
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 8.8e-32 143.3 150 48.7
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-25 122.9 120 54.2
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.8e-24 119.0 85 65.9
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 6.7e-24 117.1 69 78.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 4.4e-23 114.4 87 64.4
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.4e-21 109.4 106 53.8
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.0e-19 103.2 81 58.0
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.3e-19 102.8 90 53.3
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.6e-17 95.9 322 27.0
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.7e-17 94.4 274 28.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 6.3e-14 84.0 397 25.2
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 8.3e-14 83.6 309 25.9
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.4e-13 82.8 312 23.7
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.0e-11 74.3 307 24.1
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.0e-11 74.3 321 23.4
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 8.6e-11 73.6 260 23.8
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 3.3e-10 71.6 323 23.2
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.2e-09 69.7 302 23.5
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.8e-08 65.9 65 56.9
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 2.3e-08 65.5 202 28.2
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.0e-07 62.4 213 23.0
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.4e-07 61.6 30 83.3
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 3.4e-07 61.6 339 22.7
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.4e-07 61.2 302 24.5
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.4e-07 61.2 301 23.6
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 7.5e-07 60.5 303 24.8
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.3e-06 59.7 94 37.2
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.8e-06 58.5 84 42.9
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 6.3e-06 57.4 73 42.5
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 8.3e-06 57.0 216 24.5


User provided reference genes

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