Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 5.5e-88 327.8 189 100.0
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 2.4e-59 232.6 182 70.9
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 6.4e-52 208.0 186 61.8
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 3.2e-51 205.7 179 63.7
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 5.4e-51 204.9 184 63.0
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 6.0e-50 201.4 184 62.5
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 7.8e-50 201.1 184 61.4
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 3.9e-49 198.7 184 61.4
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 5.1e-49 198.4 184 59.8
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.9e-48 196.4 184 62.5
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 1.9e-48 196.4 184 61.4
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 5.6e-48 194.9 187 59.4
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 5.6e-48 194.9 179 63.1
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 7.3e-48 194.5 184 62.5
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 9.5e-48 194.1 187 58.3
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 1.2e-47 193.7 182 61.0
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.2e-47 193.7 184 58.2
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 2.1e-47 193.0 182 59.3
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 2.1e-47 193.0 183 60.7
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 3.6e-47 192.2 184 60.9
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 4.7e-47 191.8 187 57.2
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 6.2e-47 191.4 187 56.7
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 1.1e-46 190.7 184 58.2
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 1.4e-46 190.3 187 58.3
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 2.4e-46 189.5 184 57.6
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 4.0e-46 188.7 184 59.8
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 6.8e-46 188.0 184 58.2
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.2e-45 187.2 187 58.3
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.2e-45 187.2 184 58.7
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 1.2e-45 187.2 187 57.2
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.0e-45 186.4 183 60.1
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 3.4e-45 185.7 184 57.6
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 4.4e-45 185.3 184 57.1
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 5.8e-45 184.9 184 56.5
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 7.6e-45 184.5 181 56.9
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 1.3e-44 183.7 184 56.5
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 2.2e-44 183.0 187 56.7
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 2.9e-44 182.6 182 57.7
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 8.4e-44 181.0 183 55.2
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 8.4e-44 181.0 184 55.4
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 1.9e-43 179.9 184 56.0
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 2.4e-43 179.5 188 53.2
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 3.2e-43 179.1 190 58.9
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 4.2e-43 178.7 189 53.4
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 7.1e-43 177.9 168 60.1
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.2e-42 177.2 179 59.2
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 2.1e-42 176.4 184 55.4
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 2.7e-42 176.0 184 54.3
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 4.6e-42 175.3 187 54.0
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 1.7e-41 173.3 184 55.4
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 9.6e-40 167.5 177 54.8
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 9.6e-40 167.5 186 54.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.1e-39 166.4 156 59.6
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 8.1e-39 164.5 186 50.0
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 2.4e-38 162.9 184 52.7
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 3.8e-36 155.6 145 56.6
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 5.4e-35 151.8 145 59.3
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 5.4e-35 151.8 176 52.3
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.3e-32 142.5 181 48.6
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 3.6e-31 139.0 187 50.8
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 3.1e-30 136.0 174 47.7
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.5e-29 133.7 156 51.3
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 2.0e-29 133.3 184 47.3
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 1.8e-25 120.2 179 44.7
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 7.6e-21 104.8 106 55.7
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 3.8e-20 102.4 79 68.4
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 6.4e-20 101.7 165 40.6
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 4.3e-16 89.0 82 57.3
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 2.1e-15 86.7 82 56.1
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 8.2e-15 84.7 171 38.6
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 4.9e-12 75.5 81 50.6
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 9.3e-11 71.2 85 45.9
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 7.9e-10 68.2 54 64.8
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 1.9e-08 63.5 87 48.3
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 1.8e-06 57.0 142 33.1
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 3.1e-06 56.2 92 37.0


User provided reference genes

Program Settings