Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231570 Amaranthus hybridus HOM05D029606 ORTHO05D001640 7.7e-63 244.2 181 100.0
EL10Ac8g19068 Beta vulgaris HOM05D029606 ORTHO05D001640 1.6e-15 87.0 197 52.8
AUR62025244 Chenopodium quinoa HOM05D029606 ORTHO05D001640 6.0e-15 85.1 51 76.5
AUR62028941 Chenopodium quinoa HOM05D029606 ORTHO05D001640 3.0e-14 82.8 52 75.0
FvH4_5g07700 Fragaria vesca HOM05D001735 ORTHO05D001640 1.5e-10 70.5 53 67.9
FAN13G2372 Fragaria x ananassa HOM05D001735 ORTHO05D001640 1.5e-10 70.5 53 67.9
FAN18G4522 Fragaria x ananassa HOM05D001735 ORTHO05D001640 1.5e-10 70.5 53 67.9
FAN04G0391 Fragaria x ananassa HOM05D001735 ORTHO05D001640 9.9e-10 67.8 45 71.1
RcHm_v2.0_Chr7g0190771 Rosa chinensis HOM05D001735 ORTHO05D001640 2.9e-09 66.2 53 64.2
FAN08G1639 Fragaria x ananassa HOM05D001735 ORTHO05D001640 1.1e-08 64.3 45 66.7
Sc04g0000830 Simmondsia chinensis HOM05D001735 ORTHO05D001640 1.9e-08 63.5 53 56.6
QL10p004720 Quercus lobata HOM05D001735 ORTHO05D001640 2.4e-08 63.2 53 62.3
A06p30020 Brassica napus HOM05D001735 ORTHO05D001640 3.2e-08 62.8 66 53.0
BolC3t18577H Brassica oleracea HOM05D001735 ORTHO05D001640 3.2e-08 62.8 66 53.0
Carub.0008s2408 Capsella rubella HOM05D001735 ORTHO05D001640 7.1e-08 61.6 61 54.1
Thhalv10005356m.g Eutrema salsugineum HOM05D001735 ORTHO05D001640 7.1e-08 61.6 59 55.9
BraA06t25954Z Brassica rapa HOM05D001735 ORTHO05D001640 9.3e-08 61.2 66 51.5
Solyc03g111100.1 Solanum lycopersicum HOM05D001735 ORTHO05D001640 1.2e-07 60.8 50 60.0
Aa31LG1G18680 Aethionema arabicum HOM05D001735 ORTHO05D001640 1.6e-07 60.5 68 50.0
C03p63240 Brassica napus HOM05D001735 ORTHO05D001640 1.6e-07 60.5 66 51.5
Nitab4.5_0001664g0080 Nicotiana tabacum HOM05D001735 ORTHO05D001640 2.7e-07 59.7 53 58.5
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 2.7e-07 59.7 53 58.5
arahy.Tifrunner.gnm1.ann1.SZ7SGM Arachis hypogaea HOM05D001735 ORTHO05D001640 3.5e-07 59.3 52 53.8
Potri.015G091900 Populus trichocarpa HOM05D001735 ORTHO05D001640 3.5e-07 59.3 56 55.4
Sopen03g030250 Solanum pennellii HOM05D001735 ORTHO05D001640 3.5e-07 59.3 50 58.0
PGSC0003DMG400015196 Solanum tuberosum HOM05D001735 ORTHO05D001640 3.5e-07 59.3 50 58.0
TWI23G0170 Tripterygium wilfordii HOM05D001735 ORTHO05D001640 3.5e-07 59.3 53 58.5
DCAR_007476 Daucus carota HOM05D001735 ORTHO05D001640 4.6e-07 58.9 52 59.6
Sabra15G0113700 Salix brachista HOM05D001735 ORTHO05D001640 6.0e-07 58.5 56 55.4
SGA_v2.0_scaffold2956G54249 Striga asiatica HOM05D001735 ORTHO05D001640 7.8e-07 58.2 47 61.7
arahy.Tifrunner.gnm1.ann1.I5R2ME Arachis hypogaea HOM05D001735 ORTHO05D001640 1.0e-06 57.8 52 53.8
BcaB07g29681 Brassica carinata HOM05D001735 ORTHO05D001640 1.0e-06 57.8 66 50.0
Dinv00849 Davidia involucrata HOM05D001735 ORTHO05D001640 1.0e-06 57.8 52 59.6
Dinv11099 Davidia involucrata HOM05D001735 ORTHO05D001640 1.0e-06 57.8 52 59.6
Eucgr.B00140 Eucalyptus grandis HOM05D001735 ORTHO05D001640 1.0e-06 57.8 54 53.7
CAN.G352.36 Capsicum annuum HOM05D001735 ORTHO05D001640 1.3e-06 57.4 53 54.7
CAN.G352.44 Capsicum annuum HOM05D001735 ORTHO05D001640 1.3e-06 57.4 53 54.7
Migut.D01238 Erythranthe guttata HOM05D001735 ORTHO05D001640 1.3e-06 57.4 53 49.1
Atru.chr9.1025 Acer truncatum HOM05D001735 ORTHO05D001640 1.7e-06 57.0 55 54.5
BcaC03g18195 Brassica carinata HOM05D001735 ORTHO05D001640 1.7e-06 57.0 66 51.5
A01p25640 Brassica napus HOM05D001735 ORTHO05D001640 1.7e-06 57.0 56 55.4
C02p62570 Brassica napus HOM05D001735 ORTHO05D001640 1.7e-06 57.0 66 51.5
BolC1t03133H Brassica oleracea HOM05D001735 ORTHO05D001640 1.7e-06 57.0 56 55.4
BolC2t12317H Brassica oleracea HOM05D001735 ORTHO05D001640 1.7e-06 57.0 66 51.5
BraA01t02451Z Brassica rapa HOM05D001735 ORTHO05D001640 1.7e-06 57.0 56 55.4
MD14G1162100 Malus domestica HOM05D001735 ORTHO05D001640 2.3e-06 56.6 53 58.5
Manes.14G054200 Manihot esculenta HOM05D001735 ORTHO05D001640 2.3e-06 56.6 53 56.6
Prupe.5G154700 Prunus persica HOM05D001735 ORTHO05D001640 2.3e-06 56.6 52 55.8
TPR.G30012 Trifolium pratense HOM05D001735 ORTHO05D001640 2.3e-06 56.6 55 50.9
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 3.0e-06 56.2 53 52.8
Peaxi162Scf00763g00035 Petunia axillaris HOM05D001735 ORTHO05D001640 3.0e-06 56.2 41 63.4
CARHR277190 Cardamine hirsuta HOM05D001735 ORTHO05D001640 3.9e-06 55.8 68 48.5
HanXRQChr09g0272951 Helianthus annuus HOM05D001735 ORTHO05D001640 3.9e-06 55.8 54 59.3
SGA_v2.0_scaffold5G02878 Striga asiatica HOM05D000169 ORTHO05D001640 3.9e-06 55.8 51 60.8
THA.LOC104811601 Tarenaya hassleriana HOM05D001735 ORTHO05D001640 3.9e-06 55.8 42 64.3
GSVIVG01008493001 Vitis vinifera HOM05D001735 ORTHO05D001640 3.9e-06 55.8 51 56.9
AL5G27940 Arabidopsis lyrata HOM05D001735 ORTHO05D001640 5.1e-06 55.5 55 54.5
AT5G63350 Arabidopsis thaliana HOM05D001735 ORTHO05D001640 5.1e-06 55.5 54 53.7
MSTRG.4590 Avicennia marina HOM05D001735 ORTHO05D001640 5.1e-06 55.5 53 50.9
CARHR258140 Cardamine hirsuta HOM05D001735 ORTHO05D001640 5.1e-06 55.5 42 59.5
Gorai.003G109600 Gossypium raimondii HOM05D001735 ORTHO05D001640 5.1e-06 55.5 52 51.9
Lsat_1_v5_gn_5_13421 Lactuca sativa HOM05D001735 ORTHO05D001640 5.1e-06 55.5 46 63.0
Peaxi162Scf00089g00038 Petunia axillaris HOM05D001735 ORTHO05D001640 5.1e-06 55.5 53 54.7
Psat4g063960 Pisum sativum HOM05D001735 ORTHO05D001640 5.1e-06 55.5 53 52.8
Glyma.05G045800 Glycine max HOM05D001735 ORTHO05D001640 6.6e-06 55.1 55 52.7
MD06G1147800 Malus domestica HOM05D001735 ORTHO05D001640 6.6e-06 55.1 53 56.6
AL8G40410 Arabidopsis lyrata HOM05D001735 ORTHO05D001640 8.7e-06 54.7 68 48.5
C01p32230 Brassica napus HOM05D001735 ORTHO05D001640 8.7e-06 54.7 43 60.5
Ca_26492_v3 Cicer arietinum L. HOM05D001735 ORTHO05D001640 8.7e-06 54.7 54 51.9
Ciclev10021486m.g Citrus clementina HOM05D001735 ORTHO05D001640 8.7e-06 54.7 44 59.1
Hma1.2p1_0014F.1_g009790 Hydrangea macrophylla HOM05D001735 ORTHO05D001640 8.7e-06 54.7 53 54.7
Rhsim12G0172700 Rhododendron simsii HOM05D001735 ORTHO05D001640 8.7e-06 54.7 53 54.7
vmacro16652 Vaccinium macrocarpon HOM05D001735 ORTHO05D001640 8.7e-06 54.7 53 56.6


User provided reference genes

Program Settings