Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 2.8e-155 552.0 290 100.0
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 2.9e-96 355.9 325 65.8
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 7.2e-79 298.1 380 51.6
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.2e-76 290.8 365 52.3
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 2.2e-72 276.6 362 49.2
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 6.5e-72 275.0 382 50.8
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 8.5e-72 274.6 356 47.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 1.9e-71 273.5 366 48.9
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 5.5e-71 271.9 362 49.2
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 7.2e-71 271.6 356 47.5
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 6.1e-70 268.5 279 54.8
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 8.0e-70 268.1 375 46.4
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 6.8e-69 265.0 371 45.0
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 8.8e-69 264.6 339 49.6
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 2.6e-68 263.1 360 46.7
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 4.4e-68 262.3 363 45.5
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 9.8e-68 261.2 378 45.0
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 1.3e-67 260.8 329 48.9
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 1.3e-67 260.8 375 46.4
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.2e-67 260.0 360 45.6
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 2.8e-67 259.6 368 45.1
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.8e-67 259.6 366 44.5
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 2.8e-67 259.6 319 49.8
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 3.7e-67 259.2 374 47.6
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 4.8e-67 258.8 313 50.2
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 4.8e-67 258.8 376 45.2
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 6.3e-67 258.5 312 51.0
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 8.3e-67 258.1 392 44.1
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 8.3e-67 258.1 370 44.6
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 1.1e-66 257.7 369 45.0
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.1e-66 257.7 352 46.0
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.4e-66 257.3 368 47.3
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 1.8e-66 256.9 311 50.8
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 2.4e-66 256.5 351 46.4
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 2.4e-66 256.5 375 45.3
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.4e-66 256.5 375 45.3
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 2.4e-66 256.5 338 47.9
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 3.1e-66 256.1 360 45.8
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 3.1e-66 256.1 350 45.4
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 4.1e-66 255.8 352 46.3
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 7.0e-66 255.0 314 50.3
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 7.0e-66 255.0 366 45.1
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 9.1e-66 254.6 376 46.0
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 9.1e-66 254.6 370 43.8
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 9.1e-66 254.6 349 46.1
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 1.2e-65 254.2 363 44.9
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 1.2e-65 254.2 355 46.2
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-65 253.8 375 45.3
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 1.6e-65 253.8 369 44.7
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.6e-65 253.8 359 46.2
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 1.6e-65 253.8 321 48.6
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.0e-65 253.4 376 44.7
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 2.7e-65 253.1 370 44.6
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 2.7e-65 253.1 305 50.8
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.7e-65 253.1 368 44.8
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 3.5e-65 252.7 315 48.9
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 3.5e-65 252.7 360 45.0
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 3.5e-65 252.7 332 47.0
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 3.5e-65 252.7 319 48.3
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 3.5e-65 252.7 303 50.8
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 4.5e-65 252.3 349 46.4
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.5e-65 252.3 361 46.3
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 4.5e-65 252.3 385 43.4
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 4.5e-65 252.3 366 44.0
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 5.9e-65 251.9 345 45.8
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.9e-65 251.9 360 45.8
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 5.9e-65 251.9 376 47.1
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 7.7e-65 251.5 318 49.1
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 1.0e-64 251.1 366 43.7
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.0e-64 251.1 372 44.9
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.3e-64 250.8 366 45.4
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 1.7e-64 250.4 376 44.1
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 1.7e-64 250.4 366 43.7
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.2e-64 250.0 372 44.9
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 2.2e-64 250.0 315 49.5
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.2e-64 250.0 366 43.4
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.9e-64 249.6 319 49.2
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 2.9e-64 249.6 364 45.3
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 3.8e-64 249.2 326 48.5
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 3.8e-64 249.2 375 44.8
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 3.8e-64 249.2 314 48.4
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 5.0e-64 248.8 384 44.0
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 5.0e-64 248.8 322 48.4
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 6.5e-64 248.4 370 46.5
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 6.5e-64 248.4 370 46.5
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 8.5e-64 248.1 316 49.4
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 8.5e-64 248.1 316 48.7
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.1e-63 247.7 371 44.2
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.1e-63 247.7 339 45.1
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 1.1e-63 247.7 376 44.4
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.1e-63 247.7 375 46.7
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.5e-63 247.3 326 47.2
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 1.9e-63 246.9 383 47.3
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 1.9e-63 246.9 383 47.3
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 3.2e-63 246.1 383 47.3
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 4.2e-63 245.7 354 45.5
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 4.2e-63 245.7 368 44.8
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 5.5e-63 245.4 390 44.1
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 5.5e-63 245.4 390 44.1
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 5.5e-63 245.4 325 48.9
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 5.5e-63 245.4 303 48.2
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 5.5e-63 245.4 352 46.3
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 9.5e-63 244.6 313 47.9
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.2e-62 244.2 315 46.7
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.2e-62 244.2 356 44.7
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 2.1e-62 243.4 323 49.5
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 2.8e-62 243.0 301 49.2
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 2.8e-62 243.0 379 43.0
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.7e-62 242.3 320 47.2
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 6.1e-62 241.9 327 48.9
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 8.0e-62 241.5 319 47.3
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 8.0e-62 241.5 304 49.7
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 1.4e-61 240.7 320 46.2
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 3.0e-61 239.6 327 48.3
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 5.2e-61 238.8 329 45.6
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 6.8e-61 238.4 375 46.1
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 1.5e-60 237.3 310 49.4
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.5e-60 237.3 321 45.8
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 2.0e-60 236.9 318 46.9
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.6e-60 236.5 254 54.3
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.4e-60 236.1 318 46.5
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 4.4e-60 235.7 366 45.6
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 4.4e-60 235.7 314 46.2
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 5.7e-60 235.3 247 53.8
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.7e-59 233.8 318 46.5
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 4.5e-57 225.7 336 43.8
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 7.8e-57 224.9 385 40.3
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.0e-56 224.6 321 44.5
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 5.6e-55 218.8 243 50.2
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 2.1e-54 216.9 346 41.0
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 6.1e-54 215.3 223 54.7
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 6.8e-53 211.8 352 42.6
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 6.8e-53 211.8 412 37.9
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.0e-52 210.3 308 41.9
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.3e-51 207.6 312 40.7
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 1.3e-51 207.6 358 37.2
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.7e-51 207.2 305 41.6
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 3.2e-50 203.0 331 42.3
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 7.0e-50 201.8 241 48.5
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.7e-48 197.2 272 46.3
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 2.3e-48 196.8 320 40.0
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.5e-47 193.4 264 45.5
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 4.3e-47 192.6 273 44.3
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 3.4e-44 183.0 301 44.5
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 6.4e-43 178.7 292 40.8
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 5.4e-42 175.6 267 44.2
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 8.6e-40 168.3 268 42.9
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 1.9e-39 167.2 243 42.4
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.6e-38 164.1 251 41.8
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 5.2e-37 159.1 374 34.2
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 3.4e-36 156.4 369 35.0
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 1.3e-32 144.4 252 40.5
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.7e-32 144.1 156 51.9
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 4.9e-27 125.9 74 75.7
Zm00001eb362060 Zea mays HOM05D003970 ORTHO05D004615 1.9e-26 124.0 95 68.4
SEGI_24858 Sequoiadendron giganteum HOM05D003970 ORTHO05D004615 3.2e-26 123.2 104 58.7
Medtr2g039840 Medicago truncatula HOM05D003970 ORTHO05D004615 3.5e-25 119.8 104 57.7
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 6.0e-25 119.0 144 47.9
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 2.3e-24 117.1 182 44.0
Medtr2g039830 Medicago truncatula HOM05D003970 ORTHO05D004615 1.2e-22 111.3 88 61.4
COL.COLO4_18145 Corchorus olitorius HOM05D003970 ORTHO05D004615 4.0e-13 79.7 66 69.7
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 9.0e-13 78.6 77 46.8
Zm00001eb242980 Zea mays HOM05D003970 ORTHO05D004615 1.2e-12 78.2 68 64.7
Zm00001eb304220 Zea mays HOM05D003970 ORTHO05D004615 1.2e-12 78.2 68 64.7
Zm00001eb122080 Zea mays HOM05D003970 ORTHO05D004615 2.6e-12 77.0 68 64.7
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 1.3e-11 74.7 98 39.8
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 2.2e-11 73.9 163 30.7
RcHm_v2.0_Chr1g0340041 Rosa chinensis HOM05D003970 ORTHO05D004615 1.3e-08 64.7 33 78.8
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.3e-06 58.2 70 41.4
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 1.6e-06 57.8 95 30.5
Zm00001eb043210 Zea mays HOM05D008270 ORTHO05D010684 3.7e-06 56.6 34 73.5
HanXRQChr05g0141861 Helianthus annuus HOM05D000001 ORTHO05D009862 6.2e-06 55.8 38 71.1
Zm00001eb198340 Zea mays HOM05D003970 ORTHO05D004615 6.2e-06 55.8 34 70.6
Zm00001eb372010 Zea mays HOM05D008270 ORTHO05D010684 6.2e-06 55.8 30 80.0


User provided reference genes

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