Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 0.0e+00 1161.4 614 100.0
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 2.7e-245 852.0 625 74.1
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 3.2e-217 758.8 624 65.2
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 1.1e-212 743.8 630 62.7
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 5.4e-209 731.5 622 62.7
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 4.3e-206 721.8 625 61.4
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 4.3e-206 721.8 636 62.9
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 2.8e-205 719.2 626 63.4
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 3.6e-205 718.8 620 60.0
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 1.8e-204 716.5 629 58.5
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 6.8e-204 714.5 637 59.0
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 3.4e-203 712.2 606 60.7
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 5.8e-203 711.4 625 62.6
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 2.9e-202 709.1 635 60.9
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 4.1e-201 705.3 622 58.2
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 3.9e-199 698.7 619 59.6
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 5.1e-199 698.4 623 59.7
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 1.1e-198 697.2 616 62.3
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 5.6e-198 694.9 620 60.3
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 7.3e-198 694.5 618 62.5
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 9.5e-198 694.1 616 60.2
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 1.1e-196 690.6 551 67.2
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 1.8e-196 689.9 635 59.7
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 5.2e-196 688.3 623 59.6
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 2.6e-195 686.0 556 65.1
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 9.9e-195 684.1 577 63.8
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 1.3e-194 683.7 628 60.5
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 2.2e-194 682.9 620 61.1
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 2.9e-194 682.6 617 62.2
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 3.8e-194 682.2 625 58.2
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 6.4e-194 681.4 549 62.7
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 6.4e-194 681.4 620 60.6
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 1.4e-193 680.2 619 59.8
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 1.4e-193 680.2 619 59.6
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 2.4e-193 679.5 627 58.2
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 3.2e-193 679.1 622 58.0
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 3.2e-193 679.1 625 61.8
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 5.4e-193 678.3 621 59.6
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 7.1e-193 677.9 549 62.3
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 7.1e-193 677.9 627 58.2
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 2.7e-192 676.0 627 58.9
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 6.0e-192 674.9 632 58.9
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 7.8e-192 674.5 631 59.3
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 1.3e-191 673.7 622 58.8
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 2.3e-191 672.9 614 56.4
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 2.3e-191 672.9 620 59.2
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 6.6e-191 671.4 631 58.5
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 1.9e-190 669.8 626 55.4
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 2.5e-190 669.5 627 55.3
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 9.6e-190 667.5 548 64.6
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 1.2e-189 667.2 625 58.1
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 1.2e-189 667.2 618 58.1
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 1.6e-189 666.8 630 58.4
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 3.6e-189 665.6 634 59.5
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 3.6e-189 665.6 604 60.3
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 1.1e-188 664.1 633 59.9
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 1.1e-188 664.1 616 57.1
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 1.8e-188 663.3 628 59.2
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 3.1e-188 662.5 633 57.2
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 3.1e-188 662.5 633 57.2
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 4.0e-188 662.1 608 58.9
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 4.0e-188 662.1 618 59.1
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 4.0e-188 662.1 614 59.3
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 9.0e-188 661.0 634 57.4
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 3.4e-187 659.1 560 64.3
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 4.4e-187 658.7 641 55.2
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 7.6e-187 657.9 517 61.7
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 7.6e-187 657.9 605 60.0
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 1.1e-185 654.1 533 63.6
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 1.4e-185 653.7 618 57.4
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 1.4e-185 653.7 625 57.3
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 2.4e-185 652.9 627 56.6
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 2.4e-185 652.9 630 59.5
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 3.2e-185 652.5 628 58.6
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 4.2e-185 652.1 611 58.8
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 3.5e-184 649.0 648 57.4
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 5.1e-183 645.2 614 54.6
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 6.6e-183 644.8 559 59.9
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 8.7e-183 644.4 616 55.5
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 1.1e-182 644.0 553 62.2
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 6.2e-181 638.3 610 59.8
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 6.2e-181 638.3 632 54.9
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 6.9e-180 634.8 610 59.8
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 9.0e-180 634.4 547 62.9
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 5.8e-179 631.7 543 61.1
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 1.3e-178 630.6 656 54.7
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 6.4e-178 628.2 558 61.8
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 3.2e-177 625.9 613 59.2
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 1.1e-172 610.9 488 62.5
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 2.5e-161 573.2 566 59.7
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 3.5e-160 569.3 443 65.2
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 3.3e-158 562.8 625 53.3
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 6.3e-157 558.5 564 53.2
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 8.2e-157 558.1 615 49.1
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 6.7e-143 511.9 560 51.8
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 4.4e-142 509.2 558 49.8
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 1.1e-140 504.6 650 44.6
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 9.1e-140 501.5 361 62.6
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 1.2e-136 491.1 426 58.0
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 4.8e-125 452.6 432 60.4
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 1.2e-107 394.8 374 57.8
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 1.6e-107 394.4 351 65.8
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 5.2e-79 299.7 555 32.8
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 6.2e-48 196.4 479 34.7
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.0e-45 189.1 250 38.8
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.0e-45 189.1 250 38.8
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 1.1e-44 185.7 470 34.5
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 9.0e-39 166.0 290 30.0
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 7.9e-35 152.9 90 76.7
Dinv02793 Davidia involucrata HOM05D006614 ORTHO05D008217 5.9e-30 136.7 85 77.6
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 5.5e-28 130.2 90 63.3
Psat0s3066g0040 Pisum sativum HOM05D006614 ORTHO05D008217 6.1e-27 126.7 75 76.0
FAN21G3229 Fragaria x ananassa HOM05D006614 ORTHO05D008217 2.8e-24 117.9 81 71.6
Cfa001947 Carpinus fangiana HOM05D006614 ORTHO05D008217 5.3e-23 113.6 83 67.5
Aqoxy3G00115 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 5.5e-20 103.6 120 52.5
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 5.2e-18 97.1 58 70.7
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 5.7e-17 93.6 162 32.1


User provided reference genes

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