Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.1e-34 148.3 67 100.0
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.1e-18 95.1 73 61.6
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.4e-17 92.4 73 58.9
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 3.2e-14 81.3 72 56.9
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-13 79.3 69 50.7
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-13 79.3 69 50.7
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.6e-13 79.0 63 58.7
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 2.1e-13 78.6 63 58.7
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 6.0e-13 77.0 69 49.3
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 6.0e-13 77.0 63 60.3
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 3.9e-12 74.3 63 57.1
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 5.1e-12 73.9 59 62.7
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 2.5e-11 71.6 64 54.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.3e-11 71.2 58 55.2
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 3.3e-11 71.2 57 54.4
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 7.4e-11 70.1 63 44.4
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 9.6e-11 69.7 58 55.2
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.3e-10 69.3 51 51.0
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 1.6e-10 68.9 69 49.3
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.6e-10 68.9 52 61.5
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 2.8e-10 68.2 68 48.5
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 2.8e-10 68.2 63 50.8
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 3.7e-10 67.8 68 48.5
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.8e-10 67.4 58 58.6
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 4.8e-10 67.4 63 49.2
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 6.2e-10 67.0 56 51.8
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 8.2e-10 66.6 51 56.9
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.1e-09 66.2 70 44.3
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.1e-09 66.2 61 47.5
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 1.4e-09 65.9 63 47.6
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.4e-09 65.9 61 49.2
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.8e-09 65.5 50 50.0
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.8e-09 65.5 50 50.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.4e-09 65.1 56 53.6
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 3.1e-09 64.7 52 50.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 4.0e-09 64.3 69 43.5
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 5.3e-09 63.9 59 52.5
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 5.3e-09 63.9 47 59.6
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 5.3e-09 63.9 47 55.3
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 9.0e-09 63.2 61 49.2
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.2e-08 62.8 69 43.5
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-08 62.8 58 51.7
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.2e-08 62.8 58 51.7
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 1.2e-08 62.8 63 46.0
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.5e-08 62.4 47 57.4
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.0e-08 62.0 65 47.7
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.6e-08 61.6 63 49.2
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 2.6e-08 61.6 48 50.0
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.4e-08 61.2 46 58.7
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 3.4e-08 61.2 63 49.2
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 3.4e-08 61.2 65 49.2
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 3.4e-08 61.2 69 42.0
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.4e-08 61.2 70 42.9
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 4.5e-08 60.8 58 50.0
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 5.8e-08 60.5 61 49.2
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 5.8e-08 60.5 48 54.2
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 5.8e-08 60.5 58 48.3
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 5.8e-08 60.5 64 43.8
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.6e-08 60.1 69 42.0
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 7.6e-08 60.1 69 42.0
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 7.6e-08 60.1 62 48.4
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 2.2e-07 58.5 62 45.2
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 2.2e-07 58.5 45 51.1
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.9e-07 58.2 59 49.2
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 2.9e-07 58.2 63 50.8
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 2.9e-07 58.2 63 50.8
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 4.9e-07 57.4 51 54.9
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.9e-07 57.4 44 56.8
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.9e-07 57.4 62 41.9
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 6.5e-07 57.0 61 39.3
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 6.5e-07 57.0 50 46.0
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 8.4e-07 56.6 60 45.0
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 1.4e-06 55.8 65 44.6
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.9e-06 55.5 48 50.0
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 1.9e-06 55.5 60 43.3
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 2.5e-06 55.1 49 53.1
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 3.2e-06 54.7 42 57.1
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 3.2e-06 54.7 42 57.1
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 3.2e-06 54.7 42 57.1
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 3.2e-06 54.7 65 46.2
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 4.2e-06 54.3 42 57.1
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 4.2e-06 54.3 58 46.6
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 4.2e-06 54.3 53 52.8
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.2e-06 54.3 59 44.1
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 5.5e-06 53.9 65 44.6
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 5.5e-06 53.9 48 41.7
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 7.1e-06 53.5 49 51.0
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 7.1e-06 53.5 63 46.0
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 7.1e-06 53.5 48 41.7


User provided reference genes

Program Settings