Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 3.5e-106 388.3 194 100.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.5e-93 346.3 190 88.4
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 6.1e-90 334.3 190 85.8
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.0e-89 332.0 186 83.9
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.1e-88 330.1 189 84.7
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.5e-88 329.7 190 85.8
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 2.2e-87 325.9 186 84.4
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 8.2e-87 323.9 186 83.3
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 8.2e-87 323.9 186 83.3
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.4e-86 323.2 188 80.9
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.4e-86 323.2 186 81.2
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 2.4e-86 322.4 186 81.7
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 3.1e-86 322.0 186 82.3
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 3.1e-86 322.0 186 82.8
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 5.3e-86 321.2 186 81.7
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 5.3e-86 321.2 186 81.2
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 5.3e-86 321.2 189 83.1
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 9.1e-86 320.5 186 80.6
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 5.9e-85 317.8 186 79.6
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 7.7e-85 317.4 186 79.6
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.7e-84 316.2 186 80.6
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.7e-84 316.2 186 80.6
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.7e-84 316.2 186 82.8
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.7e-84 316.2 186 80.6
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.2e-84 315.8 186 80.1
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 2.2e-84 315.8 186 80.1
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 2.9e-84 315.5 186 81.2
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 5.0e-84 314.7 189 78.8
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 8.5e-84 313.9 189 79.4
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 1.9e-83 312.8 186 78.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.2e-83 311.6 186 79.6
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 4.2e-83 311.6 186 79.6
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 5.5e-83 311.2 186 76.9
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 5.5e-83 311.2 186 77.4
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 5.5e-83 311.2 186 78.5
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 7.2e-83 310.8 189 79.4
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 7.2e-83 310.8 186 79.6
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 7.2e-83 310.8 191 78.0
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.2e-82 310.1 186 79.6
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.2e-82 310.1 186 78.5
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.6e-82 309.7 186 79.0
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.6e-82 309.7 186 79.6
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 3.6e-82 308.5 184 79.3
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 3.6e-82 308.5 186 77.4
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.6e-82 308.5 186 77.4
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.7e-82 308.1 186 76.9
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 6.1e-82 307.8 186 78.0
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 6.1e-82 307.8 186 75.3
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 6.1e-82 307.8 186 76.9
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 7.9e-82 307.4 186 79.0
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.0e-81 307.0 186 78.5
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.0e-81 307.0 186 79.0
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.4e-81 306.6 186 76.9
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.4e-81 306.6 186 76.3
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.4e-81 306.6 186 76.9
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.8e-81 306.2 186 76.9
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.3e-81 305.8 186 76.3
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.3e-81 305.8 186 77.4
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.3e-81 305.8 186 76.9
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.9e-81 305.1 186 75.8
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.9e-81 305.1 186 76.3
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.9e-81 305.1 186 76.3
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.9e-81 305.1 186 76.3
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 3.9e-81 305.1 186 76.9
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 5.1e-81 304.7 186 76.9
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 5.1e-81 304.7 186 75.8
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 8.8e-81 303.9 186 76.9
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 8.8e-81 303.9 186 76.3
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 8.8e-81 303.9 186 76.3
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 8.8e-81 303.9 186 76.3
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 8.8e-81 303.9 186 76.9
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 1.1e-80 303.5 186 76.3
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.5e-80 303.1 186 75.8
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 2.0e-80 302.8 189 75.7
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 2.0e-80 302.8 184 75.5
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 2.6e-80 302.4 186 75.3
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 3.3e-80 302.0 186 75.3
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 4.4e-80 301.6 186 75.3
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 4.4e-80 301.6 186 78.0
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 5.7e-80 301.2 186 76.3
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.8e-79 298.9 191 72.8
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 6.3e-79 297.7 187 77.5
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.1e-78 297.0 207 70.0
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 3.1e-78 295.4 196 71.9
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.6e-77 292.4 189 75.1
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 2.9e-76 288.9 189 70.9
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 1.5e-75 286.6 195 72.3
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.6e-74 282.0 166 79.5
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 8.0e-74 280.8 187 70.1
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.4e-73 280.0 186 68.3
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 3.0e-73 278.9 186 73.7
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 4.0e-73 278.5 166 80.1
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 1.1e-72 276.9 168 79.2
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 9.7e-72 273.9 169 76.3
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.8e-71 272.3 184 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.8e-70 269.6 184 67.9
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 2.4e-70 269.2 188 71.3
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 9.1e-70 267.3 186 71.0
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.6e-69 266.5 184 67.9
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 4.5e-69 265.0 185 64.3
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 3.8e-68 261.9 186 68.8
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.1e-67 260.4 184 64.7
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 3.2e-67 258.8 157 76.4
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 7.2e-67 257.7 184 64.1
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 2.3e-65 252.7 251 54.6
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.0e-60 237.3 187 63.6
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 3.0e-57 225.7 138 79.0
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 6.8e-57 224.6 140 77.9
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.8e-54 216.5 135 74.8
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 2.4e-54 216.1 138 75.4
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 4.5e-53 211.8 190 55.3
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 1.2e-45 187.2 153 60.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.3e-44 183.7 124 69.4
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.3e-44 183.7 124 69.4
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 5.0e-44 181.8 162 55.6
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.1e-42 176.4 189 47.6
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 9.8e-40 167.5 103 75.7
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 3.5e-37 159.1 192 49.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 5.0e-36 155.2 202 42.6
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 5.0e-36 155.2 202 42.6
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.0e-28 131.0 76 82.9
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.3e-23 114.0 187 36.9
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 3.5e-21 105.9 86 61.6
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.5e-19 99.8 56 87.5
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.3e-19 99.4 72 62.5
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 6.2e-18 95.1 52 88.5
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 2.2e-15 86.7 73 57.5
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 4.9e-15 85.5 87 52.9
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 4.2e-14 82.4 57 68.4
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.1e-13 80.1 57 63.2
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.9e-12 75.9 55 70.9
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 7.3e-11 71.6 134 39.6
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.4e-09 67.4 48 62.5
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.7e-07 60.5 39 79.5
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.9e-07 59.7 33 84.8
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 4.9e-07 58.9 34 76.5


User provided reference genes

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