Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 9.4e-69 263.5 139 100.0
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 6.6e-54 214.2 139 81.3
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 1.6e-44 183.0 137 70.1
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 3.6e-44 181.8 141 68.1
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 7.5e-42 174.1 135 66.7
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 9.8e-42 173.7 136 68.4
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 1.3e-41 173.3 137 63.5
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 4.9e-41 171.4 137 65.0
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 4.9e-41 171.4 135 64.4
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 4.9e-41 171.4 135 65.9
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 6.4e-41 171.0 135 65.9
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 6.4e-41 171.0 137 65.0
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 8.3e-41 170.6 141 65.2
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 1.9e-40 169.5 137 64.2
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 4.1e-40 168.3 137 63.5
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 5.4e-40 167.9 139 68.3
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 7.0e-40 167.5 135 65.2
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 9.2e-40 167.2 135 63.7
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.2e-39 166.8 135 62.2
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 2.0e-39 166.0 135 63.7
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 2.0e-39 166.0 140 67.1
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 2.7e-39 165.6 135 63.0
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 2.7e-39 165.6 143 60.1
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 3.5e-39 165.2 135 63.7
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 4.6e-39 164.9 135 63.0
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 6.0e-39 164.5 131 65.6
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 7.8e-39 164.1 139 64.0
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 1.0e-38 163.7 138 63.8
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 1.0e-38 163.7 137 64.2
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 2.3e-38 162.5 133 64.7
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 2.3e-38 162.5 133 64.7
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 3.0e-38 162.2 135 64.4
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 3.9e-38 161.8 135 58.5
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 3.9e-38 161.8 135 64.4
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 6.6e-38 161.0 137 59.1
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 6.6e-38 161.0 138 65.9
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 8.6e-38 160.6 135 63.7
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 8.6e-38 160.6 139 61.2
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 1.5e-37 159.8 137 59.9
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 1.5e-37 159.8 135 63.0
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 1.5e-37 159.8 141 61.0
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 1.5e-37 159.8 139 63.3
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 1.9e-37 159.5 134 62.7
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 1.9e-37 159.5 134 62.7
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 1.9e-37 159.5 135 63.0
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 1.9e-37 159.5 136 64.7
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 3.3e-37 158.7 139 61.2
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 4.3e-37 158.3 138 59.4
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 5.6e-37 157.9 137 65.0
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 7.3e-37 157.5 137 61.3
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 7.3e-37 157.5 137 61.3
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 1.6e-36 156.4 114 74.6
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 2.1e-36 156.0 138 58.0
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 2.1e-36 156.0 137 59.9
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 2.8e-36 155.6 134 59.7
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 2.8e-36 155.6 134 59.7
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 4.7e-36 154.8 135 64.4
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 1.8e-35 152.9 135 61.5
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 8.9e-35 150.6 130 63.8
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 1.5e-34 149.8 123 64.2
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 1.5e-34 149.8 139 62.6
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 2.0e-34 149.4 135 61.5
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 2.6e-34 149.1 121 64.5
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 5.8e-34 147.9 133 59.4
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 7.5e-34 147.5 123 63.4
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 9.8e-34 147.1 123 61.8
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 9.8e-34 147.1 135 60.7
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 1.7e-33 146.4 136 55.9
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 1.7e-33 146.4 126 62.7
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 3.7e-33 145.2 132 57.6
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 3.7e-33 145.2 119 63.0
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 3.7e-33 145.2 132 55.3
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 1.4e-32 143.3 123 62.6
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 1.9e-32 142.9 132 56.1
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 1.9e-32 142.9 133 56.4
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 3.2e-32 142.1 135 57.0
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 9.2e-32 140.6 120 64.2
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 1.2e-31 140.2 128 59.4
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 6.0e-31 137.9 132 56.8
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 1.3e-30 136.7 123 59.3
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 8.6e-30 134.0 122 59.0
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 8.6e-30 134.0 138 55.8
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 1.1e-29 133.7 119 60.5
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 1.9e-29 132.9 134 54.5
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 2.5e-29 132.5 117 59.8
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 3.6e-28 128.6 131 53.4
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 8.1e-28 127.5 134 53.0
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.1e-27 127.1 129 55.0
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 1.1e-27 127.1 132 56.8
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 5.2e-27 124.8 125 58.4
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 2.6e-26 122.5 112 55.4
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 4.9e-25 118.2 134 47.8
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 9.2e-24 114.0 126 54.8
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 1.2e-23 113.6 105 58.1
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 1.2e-23 113.6 117 57.3
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 9.6e-21 104.0 128 46.1
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 6.2e-20 101.3 96 56.2
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 3.4e-18 95.5 129 45.0
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 2.7e-15 85.9 130 38.5
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 1.9e-13 79.7 128 41.4
MBI12_g37480_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 6.0e-07 58.2 51 58.8


User provided reference genes

Program Settings