Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 7.4e-118 427.2 208 100.0
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.2e-75 287.0 173 81.5
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 3.5e-75 285.4 168 82.7
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-74 283.5 168 82.7
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 9.5e-65 250.8 171 67.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 3.6e-64 248.8 171 69.0
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 4.4e-62 241.9 171 66.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.8e-61 239.2 172 68.0
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.8e-61 239.2 168 68.5
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 4.9e-61 238.4 168 67.9
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.8e-60 236.5 167 68.9
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.1e-60 235.7 165 66.1
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 5.4e-60 235.0 165 69.7
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 5.4e-60 235.0 168 66.1
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 7.0e-60 234.6 165 68.5
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 9.2e-60 234.2 168 65.5
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.6e-59 233.4 165 68.5
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.0e-59 233.0 166 66.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.7e-59 232.6 168 64.3
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 2.7e-59 232.6 166 64.5
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 3.5e-59 232.3 174 62.6
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 4.5e-59 231.9 168 66.1
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.9e-59 231.5 168 68.5
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 7.8e-59 231.1 163 68.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 7.8e-59 231.1 168 68.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.3e-58 230.3 165 69.7
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.7e-58 229.9 168 67.3
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.3e-58 229.6 164 67.7
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 6.6e-58 228.0 168 66.1
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.1e-57 227.3 165 66.1
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.1e-57 227.3 172 65.7
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.5e-57 226.9 166 67.5
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.3e-57 225.7 166 67.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.3e-57 225.7 167 66.5
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 5.6e-57 224.9 168 65.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 9.5e-57 224.2 168 64.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.6e-56 223.4 165 68.5
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.6e-56 222.2 163 64.4
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 4.7e-56 221.9 168 64.3
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 4.0e-55 218.8 163 66.3
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 4.0e-55 218.8 165 65.5
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.5e-54 216.9 163 62.6
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 4.4e-54 215.3 173 66.5
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 7.5e-54 214.5 162 61.1
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 7.5e-54 214.5 163 63.2
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.3e-53 213.8 165 62.4
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.3e-53 213.8 162 60.5
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.7e-53 213.4 168 58.9
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 2.2e-53 213.0 165 64.2
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.9e-53 212.6 165 62.4
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.9e-53 212.6 171 63.2
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 2.9e-53 212.6 163 61.3
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 2.9e-53 212.6 162 60.5
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.9e-53 212.6 162 60.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.7e-53 212.2 171 63.2
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.7e-53 212.2 171 62.6
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.7e-53 212.2 169 60.9
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 6.4e-53 211.5 169 64.5
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 6.4e-53 211.5 163 65.0
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.1e-52 210.7 175 62.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.4e-52 210.3 163 64.4
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.4e-52 209.5 164 59.1
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 3.2e-52 209.1 167 62.3
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.2e-51 207.2 165 61.8
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.2e-51 207.2 162 59.3
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-51 207.2 163 62.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-51 206.5 166 63.3
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.5e-51 205.7 163 61.3
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 4.6e-51 205.3 163 60.7
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.0e-51 204.9 165 62.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 7.8e-51 204.5 164 64.6
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 7.8e-51 204.5 163 61.3
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.0e-50 204.1 163 61.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.0e-50 204.1 169 60.9
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.0e-50 204.1 125 80.8
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.3e-50 203.8 163 60.7
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.7e-50 203.4 165 61.8
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.7e-50 203.4 156 64.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.3e-50 203.0 167 60.5
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.3e-50 203.0 165 62.4
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.0e-50 202.6 165 60.6
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 3.0e-50 202.6 166 63.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 3.0e-50 202.6 166 63.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.0e-50 202.6 164 58.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 3.9e-50 202.2 170 58.8
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.1e-49 200.7 163 61.3
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 1.5e-49 200.3 166 62.7
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.5e-49 200.3 169 58.6
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.5e-49 199.5 170 60.6
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.3e-49 199.1 165 61.2
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.3e-49 198.7 173 59.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 5.6e-49 198.4 166 61.4
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 7.3e-49 198.0 159 60.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.3e-49 198.0 164 61.6
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.6e-48 196.8 164 61.6
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.6e-48 196.8 164 62.8
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 2.1e-48 196.4 164 62.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.1e-48 196.4 164 62.2
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 4.7e-48 195.3 171 56.7
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.2e-48 194.9 165 58.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 6.2e-48 194.9 164 61.0
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.3e-47 193.0 165 59.4
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.3e-47 193.0 158 60.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.5e-46 190.3 131 68.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 4.4e-46 188.7 165 55.8
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 4.4e-46 188.7 163 57.1
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.3e-45 187.2 159 56.0
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 6.4e-45 184.9 169 58.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 6.4e-45 184.9 169 58.0
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-43 180.3 168 57.1
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.3e-42 177.2 171 56.1
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 5.1e-42 175.3 165 56.4
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.1e-42 175.3 133 60.9
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.9e-41 173.3 139 59.7
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 4.3e-41 172.2 165 53.9
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.2e-40 170.6 166 53.6
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.8e-40 169.5 127 67.7
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 5.8e-38 161.8 127 65.4
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.3e-37 160.6 166 51.8
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 2.2e-37 159.8 111 68.5
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 4.9e-37 158.7 123 61.0
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 8.3e-37 157.9 133 60.2
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.2e-36 156.0 167 52.7
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-35 154.1 167 52.1
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-35 153.3 167 52.1
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 1.7e-34 150.2 159 49.7
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 3.0e-34 149.4 170 49.4
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-33 147.1 119 59.7
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.1e-31 141.0 157 45.2
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.8e-31 140.2 159 44.7
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.4e-31 139.8 124 58.1
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 4.0e-31 139.0 129 48.1
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 5.2e-31 138.7 118 57.6
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 9.9e-30 134.4 97 62.9
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.1e-28 131.0 174 44.3
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.0e-27 125.2 155 46.5
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.6e-26 121.7 121 47.1
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.5e-25 120.6 169 39.6
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 4.3e-25 119.0 134 41.8
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 3.6e-24 115.9 89 61.8
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 4.0e-23 112.5 65 78.5
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 2.4e-20 103.2 81 61.7
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 6.0e-19 98.6 144 38.2
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 1.0e-18 97.8 62 71.0
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 1.1e-15 87.8 69 55.1
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.0e-15 85.9 162 35.8
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.6e-14 83.2 75 45.3
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.6e-14 83.2 63 61.9
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 5.8e-14 82.0 65 64.6
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 5.8e-14 82.0 86 51.2
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.6e-14 81.6 61 63.9
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.9e-14 81.3 79 51.9
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.4e-13 78.2 55 65.5
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.9e-12 77.0 61 59.0
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.2e-12 76.3 62 61.3
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.2e-12 76.3 57 63.2
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.2e-12 76.3 57 63.2
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.2e-12 76.3 94 44.7
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.3e-10 70.9 104 39.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.5e-09 67.4 60 50.0
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.3e-08 64.3 60 53.3
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.1e-08 63.5 70 44.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.7e-08 62.8 63 54.0
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 4.8e-08 62.4 102 29.4
AUR62010916 Chenopodium quinoa HOM05D004294 ORTHO05D004899 8.1e-08 61.6 42 69.0
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 9.0e-07 58.2 120 35.0
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 4.5e-06 55.8 65 41.5
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.6e-06 55.1 44 54.5


User provided reference genes

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