Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230240 Amaranthus hybridus HOM05D002763 ORTHO05D002972 4.5e-74 281.2 144 100.0
Ah.14g083520 Amaranthus hybridus HOM05D002763 ORTHO05D002972 2.7e-18 95.9 107 54.2
EL10Ac8g18334 Beta vulgaris HOM05D002763 ORTHO05D002972 1.2e-13 80.5 107 50.5
AUR62021349 Chenopodium quinoa HOM05D002763 ORTHO05D002972 3.4e-13 79.0 106 49.1
Gohir.D06G122400 Gossypium hirsutum HOM05D002763 ORTHO05D002972 1.1e-11 73.9 98 45.9
Gorai.010G142600 Gossypium raimondii HOM05D002763 ORTHO05D002972 1.1e-11 73.9 98 45.9
vmacro20817 Vaccinium macrocarpon HOM05D002763 ORTHO05D002972 1.4e-11 73.6 95 42.1
HanXRQChr03g0068451 Helianthus annuus HOM05D002763 ORTHO05D002972 2.4e-11 72.8 105 42.9
Actinidia02502 Actinidia chinensis HOM05D002763 ORTHO05D002972 3.2e-11 72.4 103 40.8
Gohir.A06G118500 Gossypium hirsutum HOM05D002763 ORTHO05D002972 3.2e-11 72.4 99 44.4
Manes.14G007800 Manihot esculenta HOM05D002763 ORTHO05D002972 5.4e-11 71.6 107 41.1
CARHR072470 Cardamine hirsuta HOM05D002763 ORTHO05D002972 9.3e-11 70.9 99 41.4
Sp5g33900 Schrenkiella parvula HOM05D002763 ORTHO05D002972 9.3e-11 70.9 99 42.4
BcaB03g16049 Brassica carinata HOM05D002763 ORTHO05D002972 2.1e-10 69.7 99 40.4
Lsat_1_v5_gn_7_56340 Lactuca sativa HOM05D002763 ORTHO05D002972 3.5e-10 68.9 105 40.0
vmacro17057 Vaccinium macrocarpon HOM05D002763 ORTHO05D002972 3.5e-10 68.9 72 50.0
QL05p083992 Quercus lobata HOM05D002763 ORTHO05D002972 4.6e-10 68.6 58 53.4
Gohir.A10G002500 Gossypium hirsutum HOM05D002763 ORTHO05D002972 6.0e-10 68.2 99 43.4
Nn8g40794 Nelumbo nucifera HOM05D002763 ORTHO05D002972 6.0e-10 68.2 97 43.3
AL2G39300 Arabidopsis lyrata HOM05D002763 ORTHO05D002972 7.9e-10 67.8 100 41.0
CSS0013694 Camellia sinensis var. sinensis HOM05D002763 ORTHO05D002972 7.9e-10 67.8 106 37.7
CANSAT01G3163 Cannabis sativa HOM05D002763 ORTHO05D002972 7.9e-10 67.8 77 48.1
Carub.0002s2571 Capsella rubella HOM05D002763 ORTHO05D002972 1.0e-09 67.4 98 42.9
CiPaw.01G090200 Carya illinoinensis HOM05D002763 ORTHO05D002972 1.0e-09 67.4 99 40.4
Duzib160G0230 Durio zibethinus HOM05D002763 ORTHO05D002972 1.0e-09 67.4 98 42.9
Gohir.D10G002500 Gossypium hirsutum HOM05D002763 ORTHO05D002972 1.0e-09 67.4 99 42.4
HanXRQChr05g0140091 Helianthus annuus HOM05D002763 ORTHO05D002972 1.3e-09 67.0 104 40.4
HanXRQChr14g0438641 Helianthus annuus HOM05D002763 ORTHO05D002972 1.3e-09 67.0 104 40.4
Potri.010G252800 Populus trichocarpa HOM05D002763 ORTHO05D002972 1.3e-09 67.0 105 41.0
Thecc.06G058900 Theobroma cacao HOM05D002763 ORTHO05D002972 1.3e-09 67.0 98 41.8
GSVIVG01010865001 Vitis vinifera HOM05D002763 ORTHO05D002972 1.3e-09 67.0 101 40.6
MBI13_g34038_MAGBIO Magnolia biondii HOM05D002763 ORTHO05D002972 1.8e-09 66.6 72 48.6
Duzib235G0511 Durio zibethinus HOM05D002763 ORTHO05D002972 2.3e-09 66.2 98 41.8
BcaC08g47445 Brassica carinata HOM05D002763 ORTHO05D002972 3.0e-09 65.9 99 39.4
A07p44070 Brassica napus HOM05D003490 ORTHO05D004835 3.0e-09 65.9 82 42.7
A09p60730 Brassica napus HOM05D002763 ORTHO05D002972 3.0e-09 65.9 101 41.6
C06p52800 Brassica napus HOM05D003490 ORTHO05D004835 3.0e-09 65.9 82 42.7
BolC6t40296H Brassica oleracea HOM05D002763 ORTHO05D002972 3.0e-09 65.9 99 39.4
BraA07t31914Z Brassica rapa HOM05D002763 ORTHO05D002972 3.0e-09 65.9 99 39.4
BraA09t41443Z Brassica rapa HOM05D002763 ORTHO05D002972 3.0e-09 65.9 101 41.6
TAR383G0950 Trochodendron aralioides HOM05D002763 ORTHO05D002972 3.0e-09 65.9 98 38.8
Aqoxy7G02792 Aquilegia oxysepala HOM05D002763 ORTHO05D002972 3.9e-09 65.5 100 42.0
Dinv20341 Davidia involucrata HOM05D002763 ORTHO05D002972 3.9e-09 65.5 97 40.2
Thhalv10019101m.g Eutrema salsugineum HOM05D002763 ORTHO05D002972 3.9e-09 65.5 99 38.4
TWI12G0424 Tripterygium wilfordii HOM05D002763 ORTHO05D002972 3.9e-09 65.5 98 38.8
FAN09G4381 Fragaria x ananassa HOM05D002763 ORTHO05D002972 5.1e-09 65.1 88 43.2
THA.LOC104813630 Tarenaya hassleriana HOM05D002763 ORTHO05D002972 5.1e-09 65.1 99 40.4
FAN02G2417 Fragaria x ananassa HOM05D002763 ORTHO05D002972 6.7e-09 64.7 88 43.2
Manes.06G177000 Manihot esculenta HOM05D002763 ORTHO05D002972 6.7e-09 64.7 106 38.7
Nn2g12759 Nelumbo nucifera HOM05D002763 ORTHO05D002972 6.7e-09 64.7 99 41.4
Rhsim01G0117300 Rhododendron simsii HOM05D002763 ORTHO05D002972 6.7e-09 64.7 72 45.8
AT1G78890 Arabidopsis thaliana HOM05D002763 ORTHO05D002972 8.7e-09 64.3 82 41.5
MD17G1163800 Malus domestica HOM05D002763 ORTHO05D002972 8.7e-09 64.3 113 38.1
RcHm_v2.0_Chr2g0149611 Rosa chinensis HOM05D002763 ORTHO05D002972 8.7e-09 64.3 108 38.9
Sp1g14980 Schrenkiella parvula HOM05D002763 ORTHO05D002972 8.7e-09 64.3 101 39.6
C08p44230 Brassica napus HOM05D002763 ORTHO05D002972 1.1e-08 63.9 101 40.6
Ca_02103_v3 Cicer arietinum L. HOM05D002763 ORTHO05D002972 1.1e-08 63.9 116 35.3
Lalb_Chr11g0074791 Lupinus albus HOM05D002763 ORTHO05D002972 1.1e-08 63.9 111 36.9
Atru.chr1.2697 Acer truncatum HOM05D002763 ORTHO05D002972 1.5e-08 63.5 98 40.8
BcaC07g41386 Brassica carinata HOM05D002763 ORTHO05D002972 1.5e-08 63.5 101 40.6
Hund09061 Selenicereus undatus HOM05D002763 ORTHO05D002972 1.5e-08 63.5 96 42.7
Hund29632 Selenicereus undatus HOM05D002763 ORTHO05D002972 1.5e-08 63.5 110 38.2
Hund29634 Selenicereus undatus HOM05D002763 ORTHO05D002972 1.5e-08 63.5 110 38.2
BolC8t51969H Brassica oleracea HOM05D002763 ORTHO05D002972 1.9e-08 63.2 100 42.0
FvH4_6g37060 Fragaria vesca HOM05D002763 ORTHO05D002972 1.9e-08 63.2 88 42.0
FAN14G0253 Fragaria x ananassa HOM05D002763 ORTHO05D002972 1.9e-08 63.2 88 42.0
Prupe.3G021500 Prunus persica HOM05D002763 ORTHO05D002972 1.9e-08 63.2 104 40.4
CSS0007147 Camellia sinensis var. sinensis HOM05D002763 ORTHO05D002972 2.5e-08 62.8 98 39.8
CDE02G2077 Ceratophyllum demersum HOM05D002763 ORTHO05D002972 2.5e-08 62.8 101 38.6
Lsat_1_v5_gn_8_69300 Lactuca sativa HOM05D002763 ORTHO05D002972 2.5e-08 62.8 81 39.5
PSO063G7647 Papaver somniferum HOM05D002763 ORTHO05D002972 2.5e-08 62.8 76 44.7
PSO170G6627 Papaver somniferum HOM05D002763 ORTHO05D002972 2.5e-08 62.8 76 44.7
CiPaw.07G196700 Carya illinoinensis HOM05D002763 ORTHO05D002972 3.3e-08 62.4 111 41.4
Sc17g0004450 Simmondsia chinensis HOM05D002763 ORTHO05D002972 3.3e-08 62.4 75 46.7
ATR0626G079 Amborella trichopoda HOM05D002763 ORTHO05D002972 4.3e-08 62.0 105 39.0
Cpa.g.sc155.21 Carica papaya HOM05D002763 ORTHO05D002972 4.3e-08 62.0 98 39.8
CiPaw.08G032700 Carya illinoinensis HOM05D002763 ORTHO05D002972 4.3e-08 62.0 112 35.7
Ciclev10026672m.g Citrus clementina HOM05D002763 ORTHO05D002972 4.3e-08 62.0 98 38.8
Gorai.011G002900 Gossypium raimondii HOM05D002763 ORTHO05D002972 4.3e-08 62.0 72 47.2
Sabra08G0003000 Salix brachista HOM05D002763 ORTHO05D002972 4.3e-08 62.0 105 41.0
SGA_v2.0_scaffold71G23992 Striga asiatica HOM05D002763 ORTHO05D002972 4.3e-08 62.0 98 36.7
CDE06G0951 Ceratophyllum demersum HOM05D002763 ORTHO05D002972 5.6e-08 61.6 106 39.6
FAN05G0930 Fragaria x ananassa HOM05D002763 ORTHO05D002972 5.6e-08 61.6 88 42.0
Lalb_Chr08g0231891 Lupinus albus HOM05D002763 ORTHO05D002972 5.6e-08 61.6 108 37.0
THA.LOC104808102 Tarenaya hassleriana HOM05D002763 ORTHO05D002972 5.6e-08 61.6 99 39.4
MSTRG.5942 Avicennia marina HOM05D002763 ORTHO05D002972 7.4e-08 61.2 119 29.4
AT1G16840 Arabidopsis thaliana HOM05D002763 ORTHO05D002972 9.6e-08 60.8 101 38.6
Thhalv10008939m.g Eutrema salsugineum HOM05D002763 ORTHO05D002972 9.6e-08 60.8 100 38.0
Lj9P542T24 Lonicera japonica HOM05D002763 ORTHO05D002972 9.6e-08 60.8 80 43.8
Aa31LG4G2120 Aethionema arabicum HOM05D002763 ORTHO05D002972 1.3e-07 60.5 72 43.1
DCAR_022613 Daucus carota HOM05D002763 ORTHO05D002972 1.3e-07 60.5 71 46.5
Migut.L01884 Erythranthe guttata HOM05D002763 ORTHO05D002972 1.3e-07 60.5 133 32.3
Potri.008G005900 Populus trichocarpa HOM05D002763 ORTHO05D002972 1.3e-07 60.5 105 40.0
Actinidia00644 Actinidia chinensis HOM05D002763 ORTHO05D002972 1.6e-07 60.1 98 38.8
ECA236G3686 Erigeron canadensis HOM05D002763 ORTHO05D002972 1.6e-07 60.1 71 43.7
Medtr2g037970 Medicago truncatula HOM05D002763 ORTHO05D002972 1.6e-07 60.1 114 36.0
AL1G29010 Arabidopsis lyrata HOM05D002763 ORTHO05D002972 2.1e-07 59.7 101 37.6
Nitab4.5_0002354g0020 Nicotiana tabacum HOM05D002763 ORTHO05D002972 2.1e-07 59.7 99 39.4
Rhsim12G0214900 Rhododendron simsii HOM05D002763 ORTHO05D002972 2.1e-07 59.7 94 36.2
arahy.Tifrunner.gnm1.ann1.TSPZ50 Arachis hypogaea HOM05D002763 ORTHO05D002972 2.8e-07 59.3 122 36.9
arahy.Tifrunner.gnm1.ann1.UM017F Arachis hypogaea HOM05D002763 ORTHO05D002972 2.8e-07 59.3 122 36.9
Carub.0001s1658 Capsella rubella HOM05D002763 ORTHO05D002972 2.8e-07 59.3 75 44.0
Oeu044672.1 Olea europaea HOM05D002763 ORTHO05D002972 2.8e-07 59.3 125 32.8
ClCG07G014620 Citrullus lanatus HOM05D002763 ORTHO05D002972 3.7e-07 58.9 101 40.6
Migut.J00801 Erythranthe guttata HOM05D002763 ORTHO05D002972 3.7e-07 58.9 121 27.3
Nitab4.5_0003757g0040 Nicotiana tabacum HOM05D002763 ORTHO05D002972 3.7e-07 58.9 99 38.4
SGA_v2.0_scaffold31G12762 Striga asiatica HOM05D002763 ORTHO05D002972 3.7e-07 58.9 120 32.5
CARHR017310 Cardamine hirsuta HOM05D002763 ORTHO05D002972 4.8e-07 58.5 101 36.6
Hma1.2p1_1326F.1_g275800 Hydrangea macrophylla HOM05D002763 ORTHO05D002972 4.8e-07 58.5 100 36.0
Rhsim12G0215000 Rhododendron simsii HOM05D002763 ORTHO05D002972 4.8e-07 58.5 98 37.8
SGA_v2.0_scaffold231G43411 Striga asiatica HOM05D002763 ORTHO05D002972 4.8e-07 58.5 42 57.1
TWI75G1671 Tripterygium wilfordii HOM05D002763 ORTHO05D002972 4.8e-07 58.5 99 36.4
DCAR_019803 Daucus carota HOM05D002763 ORTHO05D002972 6.2e-07 58.2 83 41.0
Psat1g145680 Pisum sativum HOM05D002763 ORTHO05D002972 6.2e-07 58.2 114 35.1
PGR102G1040 Punica granatum HOM05D002763 ORTHO05D002972 6.2e-07 58.2 102 38.2
VMungo1309G0960 Vigna mungo HOM05D002763 ORTHO05D002972 6.2e-07 58.2 84 38.1
Zm00001eb430490 Zea mays HOM05D002763 ORTHO05D002972 6.2e-07 58.2 82 40.2
Aa31LG7G1280 Aethionema arabicum HOM05D002763 ORTHO05D002972 8.1e-07 57.8 100 39.0
Ciclev10009733m.g Citrus clementina HOM05D002763 ORTHO05D002972 8.1e-07 57.8 97 36.1
Sopen07g004710 Solanum pennellii HOM05D002763 ORTHO05D002972 8.1e-07 57.8 134 32.1
BcaC05g25540 Brassica carinata HOM05D002763 ORTHO05D002972 1.1e-06 57.4 85 38.8
BolC5t30221H Brassica oleracea HOM05D002763 ORTHO05D002972 1.1e-06 57.4 85 38.8
BraA06t24435Z Brassica rapa HOM05D002763 ORTHO05D002972 1.1e-06 57.4 85 38.8
Cfa013449 Carpinus fangiana HOM05D002763 ORTHO05D002972 1.1e-06 57.4 109 34.9
Migut.I01192 Erythranthe guttata HOM05D002763 ORTHO05D002972 1.1e-06 57.4 92 37.0
Oeu064555.1 Olea europaea HOM05D002763 ORTHO05D002972 1.1e-06 57.4 125 32.0
Phvul.009G236400 Phaseolus vulgaris HOM05D002763 ORTHO05D002972 1.1e-06 57.4 84 38.1
BcaC07g41454 Brassica carinata HOM05D002763 ORTHO05D002972 1.4e-06 57.0 92 42.4
MELO3C022650.2 Cucumis melo HOM05D002763 ORTHO05D002972 1.4e-06 57.0 101 39.6
Dinv41172 Davidia involucrata HOM05D002763 ORTHO05D002972 1.4e-06 57.0 108 34.3
A06p12750 Brassica napus HOM05D002763 ORTHO05D002972 1.8e-06 56.6 103 37.9
CsaV3_7G030470 Cucumis sativus L. HOM05D002763 ORTHO05D002972 1.8e-06 56.6 101 39.6
MD16G1249400 Malus domestica HOM05D002763 ORTHO05D002972 1.8e-06 56.6 82 39.0
BcaB02g06672 Brassica carinata HOM05D002763 ORTHO05D002972 2.4e-06 56.2 101 35.6
SHI49894 Sapria himalayana HOM05D002763 ORTHO05D002972 2.4e-06 56.2 68 41.2
SHI50553 Sapria himalayana HOM05D002763 ORTHO05D002972 2.4e-06 56.2 68 41.2
TAR626G0777 Trochodendron aralioides HOM05D002763 ORTHO05D002972 2.4e-06 56.2 71 39.4
Peaxi162Scf00038g02522 Petunia axillaris HOM05D002763 ORTHO05D002972 3.1e-06 55.8 68 42.6
Prupe.1G076200 Prunus persica HOM05D002763 ORTHO05D002972 3.1e-06 55.8 72 43.1
QL01p020768 Quercus lobata HOM05D002763 ORTHO05D002972 3.1e-06 55.8 114 36.8
QL04p081468 Quercus lobata HOM05D002763 ORTHO05D002972 3.1e-06 55.8 114 36.8
RcHm_v2.0_Chr4g0399691 Rosa chinensis HOM05D002763 ORTHO05D002972 3.1e-06 55.8 81 40.7
SalBow5G4526 Salvia bowleyana HOM05D002763 ORTHO05D002972 3.1e-06 55.8 42 54.8
Sc15g0001020 Simmondsia chinensis HOM05D002763 ORTHO05D002972 3.1e-06 55.8 99 34.3
ECA240G2099 Erigeron canadensis HOM05D002763 ORTHO05D002972 4.0e-06 55.5 56 42.9
PGSC0003DMG400026511 Solanum tuberosum HOM05D002763 ORTHO05D002972 5.3e-06 55.1 68 42.6
Dinv25438 Davidia involucrata HOM05D002763 ORTHO05D002972 6.9e-06 54.7 82 36.6
Zm00001eb178110 Zea mays HOM05D002763 ORTHO05D002972 6.9e-06 54.7 47 53.2
Cc00_g10770 Coffea canephora HOM05D002763 ORTHO05D002972 9.0e-06 54.3 136 31.6
Duzib168G2097 Durio zibethinus HOM05D002763 ORTHO05D002972 9.0e-06 54.3 103 33.0
Solyc07g008770.4 Solanum lycopersicum HOM05D002763 ORTHO05D002972 9.0e-06 54.3 134 30.6


User provided reference genes

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