Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.7e-161 572.0 304 100.0
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.0e-112 410.6 309 73.1
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.2e-111 407.1 307 73.6
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 7.0e-109 397.9 307 71.3
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.2e-108 397.1 306 73.9
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 1.1e-90 337.4 309 63.1
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.6e-81 305.8 304 56.6
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.1e-80 302.8 307 56.4
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 3.1e-80 302.8 307 56.4
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.0e-79 300.1 306 55.9
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 3.4e-79 299.3 298 57.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.1e-77 294.3 312 55.4
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 4.1e-77 292.4 307 56.0
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 5.4e-77 292.0 304 55.6
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 5.1e-75 285.4 311 55.6
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 4.3e-74 282.3 304 53.0
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 2.1e-73 280.0 314 53.2
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 8.1e-73 278.1 311 54.3
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 2.4e-72 276.6 312 56.1
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 5.8e-71 271.9 286 53.8
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 7.6e-71 271.6 307 55.4
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.3e-70 270.8 308 56.2
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.7e-70 270.4 319 55.8
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.9e-70 269.6 309 51.5
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 8.4e-70 268.1 309 55.0
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 8.4e-70 268.1 304 52.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.1e-69 267.7 307 51.5
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.4e-69 267.3 307 54.7
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 1.9e-69 266.9 301 53.2
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.2e-69 266.2 273 54.6
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 5.4e-69 265.4 307 51.8
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 7.1e-69 265.0 279 55.2
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 7.1e-69 265.0 299 53.8
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 7.8e-68 261.5 311 54.0
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 7.8e-68 261.5 306 51.6
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.0e-67 261.2 284 52.5
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.0e-67 261.2 304 53.9
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.7e-67 260.4 307 52.8
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 8.7e-67 258.1 304 51.3
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 8.7e-67 258.1 273 57.9
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 5.6e-66 255.4 303 52.1
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 9.6e-66 254.6 288 55.6
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.6e-65 253.8 298 49.7
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.6e-65 253.8 258 57.4
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.1e-65 253.4 299 52.5
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.1e-65 253.4 298 54.0
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.1e-65 253.4 298 54.0
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 8.1e-65 251.5 277 56.3
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.1e-64 249.6 311 50.2
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 4.0e-64 249.2 302 50.0
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.4e-63 246.1 304 51.0
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 3.4e-63 246.1 397 41.6
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 3.4e-63 246.1 306 52.9
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 4.4e-63 245.7 277 50.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 4.4e-63 245.7 306 50.3
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 9.9e-63 244.6 294 50.0
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.7e-62 243.8 271 53.5
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 2.2e-62 243.4 307 50.8
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 6.4e-62 241.9 312 51.9
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 8.4e-62 241.5 302 47.4
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 2.4e-61 240.0 309 49.2
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 5.4e-61 238.8 281 50.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 9.3e-61 238.0 290 55.9
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 9.3e-61 238.0 329 46.5
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.2e-60 237.7 284 54.2
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 2.1e-60 236.9 268 54.5
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.1e-60 236.9 305 51.1
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 3.5e-60 236.1 303 53.8
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 3.5e-60 236.1 304 51.0
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 3.5e-60 236.1 307 49.5
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 4.6e-60 235.7 272 52.2
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 7.9e-60 235.0 306 51.6
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 7.9e-60 235.0 306 51.6
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.0e-59 234.6 286 50.7
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 3.0e-59 233.0 308 50.6
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 3.0e-59 233.0 308 50.6
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 8.7e-59 231.5 266 52.6
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 2.5e-58 229.9 310 50.0
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.3e-58 228.4 310 46.8
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 7.3e-58 228.4 314 47.1
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 1.6e-57 227.3 308 48.7
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.1e-57 226.9 281 50.9
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 3.6e-57 226.1 295 51.9
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 3.6e-57 226.1 307 50.2
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 6.2e-57 225.3 273 49.5
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 6.2e-57 225.3 313 47.3
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 6.9e-56 221.9 310 49.4
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 6.9e-56 221.9 271 47.6
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.5e-55 220.7 308 46.1
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.5e-55 220.7 289 48.1
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.2e-54 216.9 302 48.0
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-54 216.1 301 51.5
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.1e-53 214.5 288 50.0
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.1e-52 210.3 288 47.2
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 1.0e-51 208.0 316 44.0
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 6.7e-51 205.3 306 48.7
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-50 204.5 257 53.3
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.3e-50 203.0 255 47.5
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.6e-49 200.7 274 46.4
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.8e-49 199.1 292 48.6
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.4e-48 196.8 312 46.2
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 6.9e-48 195.3 306 48.7
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.9e-46 189.9 296 42.6
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 3.8e-46 189.5 260 51.5
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 4.9e-46 189.1 275 47.6
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 6.5e-46 188.7 258 53.9
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 3.2e-45 186.4 163 64.4
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 4.2e-45 186.0 311 40.8
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 5.5e-45 185.7 261 44.4
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.6e-44 184.1 280 47.1
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 2.7e-44 183.3 261 53.3
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.0e-43 181.4 263 42.2
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.8e-43 180.6 301 42.9
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 3.9e-43 179.5 259 51.0
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 5.1e-43 179.1 302 46.4
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 8.7e-43 178.3 306 47.7
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.5e-42 176.8 242 45.9
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 6.2e-41 172.2 259 42.5
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 2.0e-39 167.2 249 44.6
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.8e-38 162.9 267 40.1
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.4e-37 161.0 262 40.5
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 2.3e-35 153.7 164 51.8
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 5.7e-34 149.1 317 35.0
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 2.8e-33 146.7 285 34.0
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 8.2e-33 145.2 169 55.6
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.1e-32 144.8 153 56.2
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.6e-31 140.2 245 40.0
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.0e-30 138.3 311 37.6
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 1.1e-29 134.8 245 39.2
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.2e-25 120.6 277 33.2
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 3.7e-25 119.8 279 35.8
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-19 101.7 103 58.3
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.7e-17 94.4 276 33.0
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.4e-16 90.5 235 34.9
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 2.6e-15 87.0 63 61.9
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 7.7e-15 85.5 215 33.5
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 9.7e-10 68.6 52 57.7
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.3e-09 68.2 120 35.0
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 3.7e-09 66.6 59 59.3
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.8e-08 64.3 70 42.9
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.6e-07 61.2 94 39.4
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 2.7e-07 60.5 115 37.4
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 2.2e-06 57.4 118 36.4
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 2.9e-06 57.0 46 63.0


User provided reference genes

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