Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.9e-104 382.5 191 100.0
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 4.3e-48 195.3 150 68.0
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 4.3e-40 168.7 147 61.9
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 8.2e-31 137.9 154 48.7
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.5e-24 117.1 160 46.2
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 4.8e-23 112.1 116 50.9
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.8e-23 112.1 149 46.3
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 3.1e-22 109.4 149 43.6
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 7.0e-22 108.2 93 61.3
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.2e-21 107.5 155 40.0
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.6e-21 107.1 180 40.6
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 4.5e-21 105.5 87 63.2
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 5.9e-21 105.1 156 43.6
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 7.7e-21 104.8 155 40.6
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 1.0e-20 104.4 156 43.6
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.0e-20 104.4 158 42.4
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.2e-20 103.2 155 39.4
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.9e-20 102.8 151 40.4
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 3.8e-20 102.4 148 42.6
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 3.8e-20 102.4 150 42.0
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 5.0e-20 102.1 153 43.1
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 6.5e-20 101.7 165 42.4
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 8.5e-20 101.3 154 41.6
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 1.1e-19 100.9 149 42.3
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 1.1e-19 100.9 149 42.3
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 1.1e-19 100.9 149 42.3
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.5e-19 100.5 172 40.7
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.9e-19 100.1 149 42.3
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.9e-19 100.1 143 44.1
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 2.5e-19 99.8 146 42.5
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 2.5e-19 99.8 153 43.1
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 3.2e-19 99.4 164 39.6
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 3.2e-19 99.4 155 41.3
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 4.2e-19 99.0 156 40.4
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 5.5e-19 98.6 148 41.9
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 7.2e-19 98.2 153 41.8
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 9.4e-19 97.8 156 41.7
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 9.4e-19 97.8 156 41.7
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.2e-18 97.4 161 41.0
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 2.1e-18 96.7 157 40.1
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 2.7e-18 96.3 156 41.7
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.7e-18 96.3 154 40.3
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 2.7e-18 96.3 154 40.9
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 2.7e-18 96.3 149 43.6
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 2.7e-18 96.3 159 41.5
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 4.7e-18 95.5 152 40.8
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 4.7e-18 95.5 149 43.0
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 8.0e-18 94.7 171 41.5
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 1.0e-17 94.4 157 40.8
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 1.4e-17 94.0 159 41.5
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.4e-17 94.0 161 38.5
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.8e-17 93.6 152 39.5
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.3e-17 93.2 142 38.7
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.3e-17 93.2 169 37.3
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 4.0e-17 92.4 168 39.3
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 5.2e-17 92.0 147 40.1
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 5.2e-17 92.0 148 39.9
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 5.2e-17 92.0 153 42.5
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 6.7e-17 91.7 149 44.3
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 6.7e-17 91.7 173 41.6
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 6.7e-17 91.7 149 43.0
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 8.8e-17 91.3 150 43.3
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 8.8e-17 91.3 150 42.7
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 8.8e-17 91.3 150 42.7
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 8.8e-17 91.3 150 42.7
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 8.8e-17 91.3 198 34.3
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 1.2e-16 90.9 149 43.6
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 1.2e-16 90.9 150 42.7
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.2e-16 90.9 158 37.3
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.2e-16 90.9 147 39.5
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.2e-16 90.9 151 43.7
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.5e-16 90.5 197 35.0
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 1.5e-16 90.5 197 35.0
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.5e-16 90.5 158 39.9
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 1.5e-16 90.5 149 38.3
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 1.5e-16 90.5 143 41.3
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.0e-16 90.1 150 42.7
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 2.6e-16 89.7 156 39.7
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 3.3e-16 89.4 150 42.0
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 3.3e-16 89.4 171 38.6
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 3.3e-16 89.4 171 36.3
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 3.3e-16 89.4 150 42.0
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 5.7e-16 88.6 146 41.1
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 5.7e-16 88.6 151 43.0
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 7.5e-16 88.2 149 39.6
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 7.5e-16 88.2 150 42.7
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 9.7e-16 87.8 151 41.1
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 9.7e-16 87.8 154 42.9
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 1.3e-15 87.4 150 37.3
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 1.3e-15 87.4 167 36.5
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.7e-15 87.0 162 38.3
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.7e-15 87.0 159 37.7
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.8e-15 86.3 162 37.0
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 2.8e-15 86.3 150 42.0
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 2.8e-15 86.3 149 43.0
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 3.7e-15 85.9 145 40.7
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 3.7e-15 85.9 170 36.5
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 6.3e-15 85.1 151 37.1
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 8.2e-15 84.7 152 38.8
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 8.2e-15 84.7 156 37.8
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 1.1e-14 84.3 155 35.5
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.1e-14 84.3 157 40.1
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.4e-14 84.0 150 40.0
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.4e-14 84.0 151 41.7
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 1.8e-14 83.6 150 39.3
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.8e-14 83.6 152 39.5
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 4.1e-14 82.4 148 37.2
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.1e-14 82.4 151 36.4
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.1e-14 82.4 167 35.9
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 4.1e-14 82.4 194 35.6
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 5.3e-14 82.0 146 40.4
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 9.1e-14 81.3 144 38.9
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.2e-13 80.9 167 35.3
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.2e-13 80.9 164 33.5
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.6e-13 80.5 167 38.3
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 2.0e-13 80.1 171 35.7
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 3.5e-13 79.3 155 35.5
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 3.5e-13 79.3 147 37.4
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 4.5e-13 79.0 149 40.9
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 7.7e-13 78.2 156 39.7
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.7e-13 78.2 159 39.0
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 7.7e-13 78.2 151 37.1
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.0e-12 77.8 150 36.0
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.0e-12 77.8 159 39.0
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.0e-12 77.8 159 39.0
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.0e-12 77.8 144 38.9
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.3e-12 77.4 150 37.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 1.7e-12 77.0 159 36.5
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.2e-12 76.6 174 35.1
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 2.2e-12 76.6 175 38.3
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.2e-12 76.6 149 36.2
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.8e-12 75.9 167 36.5
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 6.5e-12 75.1 145 40.0
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 8.5e-12 74.7 152 35.5
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 8.5e-12 74.7 145 37.9
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 4.2e-11 72.4 157 35.0
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.2e-11 71.6 150 34.7
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 7.2e-11 71.6 170 32.4
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 7.2e-11 71.6 190 31.1
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 2.7e-10 69.7 188 30.9
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 8.0e-10 68.2 164 34.1
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 1.0e-09 67.8 159 34.0
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 5.2e-09 65.5 147 37.4
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.2e-08 64.3 186 30.6
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 7.5e-08 61.6 138 35.5
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 4.8e-07 58.9 120 35.0
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.1e-06 57.8 146 32.9
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 9.1e-06 54.7 38 63.2


User provided reference genes

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