Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g228750 Amaranthus hybridus HOM05D006346 ORTHO05D007910 0.0e+00 1291.6 649 100.0
EL10Ac8g18923 Beta vulgaris HOM05D006346 ORTHO05D007910 4.1e-300 1034.2 717 75.2
AUR62028356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 9.2e-300 1033.1 697 76.6
Hund08940 Selenicereus undatus HOM05D006346 ORTHO05D007910 1.4e-271 939.5 727 68.2
Atru.chr7.350 Acer truncatum HOM05D006346 ORTHO05D007910 1.1e-247 860.1 696 65.5
Dinv42829 Davidia involucrata HOM05D006346 ORTHO05D007910 2.4e-247 859.0 669 65.9
Dinv43271 Davidia involucrata HOM05D006346 ORTHO05D007910 2.4e-247 859.0 669 65.9
Lj9A719T56 Lonicera japonica HOM05D006346 ORTHO05D007910 6.5e-245 850.9 691 63.5
CSS0042716 Camellia sinensis var. sinensis HOM05D006346 ORTHO05D007910 3.2e-244 848.6 675 64.7
Hma1.2p1_0028F.1_g017690 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 7.9e-243 844.0 697 63.3
DCAR_019414 Daucus carota HOM05D006346 ORTHO05D007910 9.6e-241 837.0 705 62.4
Ciclev10007623m.g Citrus clementina HOM05D006346 ORTHO05D007910 1.4e-239 833.2 669 65.3
FvH4_1g00650 Fragaria vesca HOM05D006346 ORTHO05D007910 6.9e-239 830.9 663 64.6
Nitab4.5_0003551g0040 Nicotiana tabacum HOM05D006346 ORTHO05D007910 9.0e-239 830.5 696 62.5
PSO782G0769 Papaver somniferum HOM05D006346 ORTHO05D007910 3.4e-238 828.6 690 63.3
Cfa020798 Carpinus fangiana HOM05D006346 ORTHO05D007910 4.5e-238 828.2 680 64.0
FAN28G1995 Fragaria x ananassa HOM05D006346 ORTHO05D007910 5.8e-238 827.8 663 64.3
Potri.018G103700 Populus trichocarpa HOM05D006346 ORTHO05D007910 7.6e-238 827.4 674 63.9
QL02p093888 Quercus lobata HOM05D006346 ORTHO05D007910 1.0e-237 827.0 706 61.9
Sopen07g001980 Solanum pennellii HOM05D006346 ORTHO05D007910 2.2e-237 825.9 695 61.7
HanXRQChr10g0313691 Helianthus annuus HOM05D006346 ORTHO05D007910 8.4e-237 823.9 691 62.2
FAN26G0534 Fragaria x ananassa HOM05D006346 ORTHO05D007910 1.4e-236 823.2 661 63.8
Glyma.07G102300 Glycine max HOM05D006346 ORTHO05D007910 1.4e-236 823.2 687 62.2
Rhsim01G0026600 Rhododendron simsii HOM05D006346 ORTHO05D007910 1.4e-236 823.2 707 61.2
PSO063G0785 Papaver somniferum HOM05D006346 ORTHO05D007910 3.2e-236 822.0 693 62.2
CAN.G160.15 Capsicum annuum HOM05D006346 ORTHO05D007910 4.2e-236 821.6 699 61.4
Prupe.7G265700 Prunus persica HOM05D006346 ORTHO05D007910 5.5e-236 821.2 663 63.8
RcHm_v2.0_Chr2g0085271 Rosa chinensis HOM05D006346 ORTHO05D007910 7.1e-236 820.8 690 62.5
vmacro16782 Vaccinium macrocarpon HOM05D006346 ORTHO05D007910 4.6e-235 818.1 675 62.5
CANSAT11G2498 Cannabis sativa HOM05D006346 ORTHO05D007910 7.9e-235 817.4 671 63.3
Thecc.09G152100 Theobroma cacao HOM05D006346 ORTHO05D007910 1.3e-234 816.6 699 61.7
CsaV3_2G007650 Cucumis sativus L. HOM05D006346 ORTHO05D007910 6.7e-234 814.3 696 61.5
CiPaw.15G165500 Carya illinoinensis HOM05D006346 ORTHO05D007910 8.7e-234 813.9 706 61.3
ECA234G1139 Erigeron canadensis HOM05D006346 ORTHO05D007910 4.3e-233 811.6 668 62.6
Lalb_Chr08g0234231 Lupinus albus HOM05D006346 ORTHO05D007910 4.3e-233 811.6 665 63.3
Cc06_g14630 Coffea canephora HOM05D006346 ORTHO05D007910 7.4e-233 810.8 702 61.0
TWI34G0405 Tripterygium wilfordii HOM05D006346 ORTHO05D007910 7.4e-233 810.8 691 62.2
COL.COLO4_23953 Corchorus olitorius HOM05D006346 ORTHO05D007910 6.3e-232 807.7 699 61.5
MSTRG.6156 Avicennia marina HOM05D006346 ORTHO05D007910 2.4e-231 805.8 686 61.2
Gohir.A04G059826 Gossypium hirsutum HOM05D006346 ORTHO05D007910 6.9e-231 804.3 698 61.9
Gorai.012G099000 Gossypium raimondii HOM05D006346 ORTHO05D007910 6.9e-231 804.3 698 61.6
PGR102G0252 Punica granatum HOM05D006346 ORTHO05D007910 6.9e-231 804.3 703 61.2
ClCG02G014350 Citrullus lanatus HOM05D006346 ORTHO05D007910 9.0e-231 803.9 708 60.5
Gohir.D04G088700 Gossypium hirsutum HOM05D006346 ORTHO05D007910 1.5e-230 803.1 698 61.7
Phvul.003G072700 Phaseolus vulgaris HOM05D006346 ORTHO05D007910 2.6e-230 802.4 672 62.2
GSVIVG01008451001 Vitis vinifera HOM05D006346 ORTHO05D007910 2.6e-230 802.4 688 62.1
Lj6g0013256 Lotus japonicus HOM05D006346 ORTHO05D007910 3.4e-230 802.0 701 60.1
Sed0021167 Sechium edule HOM05D006346 ORTHO05D007910 5.9e-230 801.2 667 61.8
Sabra18G0089100 Salix brachista HOM05D006346 ORTHO05D007910 7.7e-230 800.8 718 59.6
Aqoxy7G03359 Aquilegia oxysepala HOM05D006346 ORTHO05D007910 3.8e-229 798.5 671 63.6
arahy.Tifrunner.gnm1.ann1.ID3JIZ Arachis hypogaea HOM05D006346 ORTHO05D007910 8.5e-229 797.3 663 62.1
Nitab4.5_0002611g0100 Nicotiana tabacum HOM05D006346 ORTHO05D007910 5.5e-228 794.7 696 60.6
THA.LOC104803912 Tarenaya hassleriana HOM05D006346 ORTHO05D007910 1.0e-226 790.4 672 62.2
Medtr8g467050 Medicago truncatula HOM05D006346 ORTHO05D007910 1.4e-226 790.0 671 61.3
Nn8g39991 Nelumbo nucifera HOM05D006346 ORTHO05D007910 1.8e-226 789.6 674 62.5
Lsat_1_v5_gn_5_89421 Lactuca sativa HOM05D006346 ORTHO05D007910 3.3e-225 785.4 691 60.6
BraA03t15070Z Brassica rapa HOM05D006346 ORTHO05D007910 4.3e-225 785.0 691 60.2
A03p60280 Brassica napus HOM05D006346 ORTHO05D007910 5.7e-225 784.6 679 60.7
AT4G30720 Arabidopsis thaliana HOM05D006346 ORTHO05D007910 9.7e-225 783.9 689 60.5
AL7G21400 Arabidopsis lyrata HOM05D006346 ORTHO05D007910 1.3e-224 783.5 671 61.7
Thhalv10024548m.g Eutrema salsugineum HOM05D006346 ORTHO05D007910 4.8e-224 781.6 690 59.9
BolC7t46278H Brassica oleracea HOM05D006346 ORTHO05D007910 8.2e-224 780.8 680 60.7
Carub.0007s0978 Capsella rubella HOM05D006346 ORTHO05D007910 8.2e-224 780.8 713 58.8
Haze_19155 Corylus avellana HOM05D006346 ORTHO05D007910 1.1e-223 780.4 706 60.2
BcaNung01563 Brassica carinata HOM05D006346 ORTHO05D007910 1.8e-223 779.6 706 59.2
C07p58190 Brassica napus HOM05D006346 ORTHO05D007910 6.9e-223 777.7 682 60.6
BcaNung02744 Brassica carinata HOM05D006346 ORTHO05D007910 2.6e-222 775.8 680 60.6
MELO3C004121.2 Cucumis melo HOM05D006346 ORTHO05D007910 2.6e-222 775.8 691 60.2
Oeu052219.3 Olea europaea HOM05D006346 ORTHO05D007910 2.2e-221 772.7 734 57.1
FAN23G2716 Fragaria x ananassa HOM05D006346 ORTHO05D007910 3.8e-221 771.9 708 58.2
Sp7g28630 Schrenkiella parvula HOM05D006346 ORTHO05D007910 9.4e-220 767.3 702 59.0
Os05g0411200 Oryza sativa ssp. japonica HOM05D006346 ORTHO05D007910 1.2e-219 766.9 671 60.4
SGA_v2.0_scaffold45G17017 Striga asiatica HOM05D006346 ORTHO05D007910 7.9e-219 764.2 737 56.7
Ca_22901_v3 Cicer arietinum L. HOM05D006346 ORTHO05D007910 1.4e-218 763.5 670 60.3
Aa31LG2G19630 Aethionema arabicum HOM05D006346 ORTHO05D007910 5.1e-218 761.5 697 59.3
Migut.J01382 Erythranthe guttata HOM05D006346 ORTHO05D007910 8.8e-218 760.8 673 59.4
Solyc07g005870.3 Solanum lycopersicum HOM05D006346 ORTHO05D007910 1.5e-214 750.0 668 60.2
Actinidia38309 Actinidia chinensis HOM05D006346 ORTHO05D007910 2.3e-210 736.1 572 66.4
MD02G1005300 Malus domestica HOM05D006346 ORTHO05D007910 1.1e-209 733.8 606 63.0
Sc14g0000950 Simmondsia chinensis HOM05D006346 ORTHO05D007910 5.7e-209 731.5 607 63.4
Zm00001eb288040 Zea mays HOM05D006346 ORTHO05D007910 2.2e-208 729.6 664 58.4
HPP92_020605 Vanilla planifolia HOM05D006346 ORTHO05D007910 1.1e-207 727.2 706 55.5
ATR0739G030 Amborella trichopoda HOM05D006346 ORTHO05D007910 1.4e-207 726.9 573 64.0
Peaxi162Scf00401g00218 Petunia axillaris HOM05D006346 ORTHO05D007910 2.4e-207 726.1 670 58.8
CDE12G0948 Ceratophyllum demersum HOM05D006346 ORTHO05D007910 3.5e-206 722.2 694 58.5
SalBow1G6401 Salvia bowleyana HOM05D006346 ORTHO05D007910 4.7e-203 711.8 571 63.7
arahy.Tifrunner.gnm1.ann1.VMKR8Z Arachis hypogaea HOM05D006346 ORTHO05D007910 6.5e-197 691.4 588 61.6
Psat4g134640 Pisum sativum HOM05D006346 ORTHO05D007910 1.8e-191 673.3 598 60.0
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.3e-189 666.4 606 57.6
Manes.14G142800 Manihot esculenta HOM05D006346 ORTHO05D007910 8.0e-179 631.3 547 62.0
Pp3c23_14180 Physcomitrium patens HOM05D006346 ORTHO05D007910 1.8e-162 577.0 618 50.2
TPR.G10032 Trifolium pratense HOM05D006346 ORTHO05D007910 7.6e-161 571.6 1248 33.7
SMO146G0018 Selaginella moellendorffii HOM05D006346 ORTHO05D007910 1.7e-160 570.5 603 50.4
AagrBONN_evm.TU.Sc2ySwM_344.1120 Anthoceros agrestis HOM05D006346 ORTHO05D007910 3.0e-157 559.7 647 48.2
Mapoly0021s0085 Marchantia polymorpha HOM05D006346 ORTHO05D007910 3.9e-157 559.3 619 50.6
Cpa.g.sc46.182 Carica papaya HOM05D006346 ORTHO05D007910 1.3e-141 507.7 400 65.8
Glyma.04G155100 Glycine max HOM05D006346 ORTHO05D007910 7.4e-140 501.9 386 64.2
Hma1.2p1_0028F.1_g017700 Hydrangea macrophylla HOM05D006346 ORTHO05D007910 3.1e-138 496.5 445 59.3
Cre17.g744997 Chlamydomonas reinhardtii HOM05D006346 ORTHO05D007910 2.6e-121 440.3 522 48.1
TAR383G0381 Trochodendron aralioides HOM05D006346 ORTHO05D007910 1.3e-120 438.0 375 61.3
MCO14G279 Micromonas commoda HOM05D006346 ORTHO05D007910 1.7e-120 437.6 476 49.8
PRCOL_00000449 Prasinoderma coloniale HOM05D006346 ORTHO05D007910 4.3e-116 422.9 609 42.7
AUR62025356 Chenopodium quinoa HOM05D006346 ORTHO05D007910 1.1e-108 398.3 304 68.8
VMungo0251G1020 Vigna mungo HOM05D006346 ORTHO05D007910 4.1e-106 389.8 273 69.2
Eucgr.C02507 Eucalyptus grandis HOM05D006346 ORTHO05D007910 1.7e-104 384.4 332 60.8
AUR62025355 Chenopodium quinoa HOM05D006346 ORTHO05D007910 6.1e-94 349.4 203 85.7
TAR383G0466 Trochodendron aralioides HOM05D006346 ORTHO05D007910 5.2e-93 346.3 225 76.0
CAN.G160.19 Capsicum annuum HOM05D006346 ORTHO05D007910 3.1e-82 310.5 461 42.7
Eucgr.C02508 Eucalyptus grandis HOM05D006346 ORTHO05D007910 3.2e-79 300.4 303 54.5
PGSC0003DMG400011203 Solanum tuberosum HOM05D006346 ORTHO05D007910 7.2e-79 299.3 203 72.4
Actinidia24372 Actinidia chinensis HOM05D006346 ORTHO05D007910 3.8e-72 276.9 591 33.8
Cpa.g.sc46.183 Carica papaya HOM05D006346 ORTHO05D007910 2.1e-62 244.6 245 55.5
CARHR238600 Cardamine hirsuta HOM05D006346 ORTHO05D007910 1.9e-58 231.5 264 50.4
FAN23G0300 Fragaria x ananassa HOM05D006346 ORTHO05D007910 6.0e-57 226.5 155 69.7
SEGI_02941 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.3e-48 198.0 157 64.3
Glyma.04G155150 Glycine max HOM05D006346 ORTHO05D007910 1.3e-43 182.2 144 63.9
CAN.G1961.3 Capsicum annuum HOM05D006346 ORTHO05D007910 8.6e-40 169.5 203 51.2
SEGI_30041 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 2.1e-33 148.3 102 72.5
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 7.6e-20 103.2 117 53.8
MD15G1149600 Malus domestica HOM05D006346 ORTHO05D007910 1.7e-19 102.1 114 48.2
SalBow1G2918 Salvia bowleyana HOM05D006346 ORTHO05D007910 2.9e-19 101.3 87 57.5
HanXRQChr01g0001911 Helianthus annuus HOM05D006346 ORTHO05D007910 3.9e-16 90.9 51 78.4
Glyma.04G155200 Glycine max HOM05D006346 ORTHO05D007910 3.3e-15 87.8 87 60.9
SEGI_23921 Sequoiadendron giganteum HOM05D006346 ORTHO05D007910 1.3e-11 75.9 98 39.8
A05p44400 Brassica napus HOM05D034890 ORTHO05D100541 1.2e-09 69.3 58 60.3


User provided reference genes

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