Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g228540 Amaranthus hybridus HOM05D006260 ORTHO05D007860 6.2e-89 330.9 178 100.0
Ah.14g085330 Amaranthus hybridus HOM05D006260 ORTHO05D007860 4.7e-81 304.7 177 88.7
AUR62027428 Chenopodium quinoa HOM05D006260 ORTHO05D007860 3.1e-72 275.4 177 82.5
CSS0028862 Camellia sinensis var. sinensis HOM05D006260 ORTHO05D007860 4.6e-68 261.5 178 75.3
ATR0580G108 Amborella trichopoda HOM05D006260 ORTHO05D007860 2.3e-67 259.2 168 75.0
Atru.chr7.896 Acer truncatum HOM05D006260 ORTHO05D007860 5.1e-67 258.1 178 78.1
Lj6g0019941 Lotus japonicus HOM05D006260 ORTHO05D007860 8.6e-67 257.3 178 73.6
Lj5A659T18 Lonicera japonica HOM05D006260 ORTHO05D007860 3.3e-66 255.4 178 73.6
COL.COLO4_14462 Corchorus olitorius HOM05D006260 ORTHO05D007860 7.3e-66 254.2 170 78.2
AT4G29870 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 1.2e-65 253.4 160 79.4
AL7G22380 Arabidopsis lyrata HOM05D006260 ORTHO05D007860 2.1e-65 252.7 174 75.9
CANSAT11G1813 Cannabis sativa HOM05D006260 ORTHO05D007860 2.1e-65 252.7 178 74.2
Carub.0004s1476 Capsella rubella HOM05D006260 ORTHO05D007860 2.1e-65 252.7 178 74.2
MSTRG.19359 Avicennia marina HOM05D006260 ORTHO05D007860 2.8e-65 252.3 157 79.6
TPR.G2550 Trifolium pratense HOM05D006260 ORTHO05D007860 2.8e-65 252.3 178 74.2
CDE07G0891 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 4.7e-65 251.5 155 81.3
ClCG06G013810 Citrullus lanatus HOM05D006260 ORTHO05D007860 6.2e-65 251.1 178 74.2
RcHm_v2.0_Chr4g0398801 Rosa chinensis HOM05D006260 ORTHO05D007860 6.2e-65 251.1 178 73.0
unitig_8.g4053 Utricularia gibba HOM05D006260 ORTHO05D007860 6.2e-65 251.1 167 74.3
Oeu012389.1 Olea europaea HOM05D006260 ORTHO05D007860 8.1e-65 250.8 180 72.2
Potri.018G139600 Populus trichocarpa HOM05D006260 ORTHO05D007860 8.1e-65 250.8 175 73.7
Thhalv10026375m.g Eutrema salsugineum HOM05D006260 ORTHO05D007860 1.1e-64 250.4 174 74.7
Migut.J00776 Erythranthe guttata HOM05D006260 ORTHO05D007860 1.4e-64 250.0 172 74.4
DCAR_018008 Daucus carota HOM05D006260 ORTHO05D007860 1.8e-64 249.6 152 82.2
Oeu043898.1 Olea europaea HOM05D006260 ORTHO05D007860 1.8e-64 249.6 179 72.1
Psat1g142480 Pisum sativum HOM05D006260 ORTHO05D007860 1.8e-64 249.6 178 73.0
PGSC0003DMG400015598 Solanum tuberosum HOM05D006260 ORTHO05D007860 1.8e-64 249.6 179 74.9
FvH4_4g06900 Fragaria vesca HOM05D006260 ORTHO05D007860 2.4e-64 249.2 178 71.9
MBI14_g10729_MAGBIO Magnolia biondii HOM05D006260 ORTHO05D007860 2.4e-64 249.2 170 77.1
Sp7g27680 Schrenkiella parvula HOM05D006260 ORTHO05D007860 2.4e-64 249.2 178 71.9
CANSAT21G0469 Cannabis sativa HOM05D006260 ORTHO05D007860 3.1e-64 248.8 178 73.0
SalBow3G0163 Salvia bowleyana HOM05D006260 ORTHO05D007860 3.1e-64 248.8 158 79.7
Solyc05g006080.1 Solanum lycopersicum HOM05D006260 ORTHO05D007860 3.1e-64 248.8 179 74.9
Sopen05g002100 Solanum pennellii HOM05D006260 ORTHO05D007860 3.1e-64 248.8 179 74.9
TWI38G0675 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 3.1e-64 248.8 178 74.7
Sc18g0003820 Simmondsia chinensis HOM05D006260 ORTHO05D007860 4.0e-64 248.4 175 72.6
Aa31LG2G20680 Aethionema arabicum HOM05D006260 ORTHO05D007860 5.2e-64 248.1 176 72.7
CARHR237780 Cardamine hirsuta HOM05D006260 ORTHO05D007860 5.2e-64 248.1 174 74.1
Lj5A667T13 Lonicera japonica HOM05D006260 ORTHO05D007860 5.2e-64 248.1 178 73.0
Lj5A660T21 Lonicera japonica HOM05D006260 ORTHO05D007860 6.9e-64 247.7 178 71.9
C01p09330 Brassica napus HOM05D006260 ORTHO05D007860 9.0e-64 247.3 174 73.0
BolC1t00921H Brassica oleracea HOM05D006260 ORTHO05D007860 9.0e-64 247.3 174 73.0
Haze_22050 Corylus avellana HOM05D006260 ORTHO05D007860 9.0e-64 247.3 155 76.8
CsaV3_1G032030 Cucumis sativus L. HOM05D006260 ORTHO05D007860 9.0e-64 247.3 178 71.9
Sed0022699 Sechium edule HOM05D006260 ORTHO05D007860 9.0e-64 247.3 178 69.7
TWI63G0540 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 9.0e-64 247.3 178 73.6
GSVIVG01029271001 Vitis vinifera HOM05D006260 ORTHO05D007860 9.0e-64 247.3 178 73.6
A01p08290 Brassica napus HOM05D006260 ORTHO05D007860 1.2e-63 246.9 170 71.8
BraA01t00777Z Brassica rapa HOM05D006260 ORTHO05D007860 1.2e-63 246.9 170 71.8
MELO3C017413.2 Cucumis melo HOM05D006260 ORTHO05D007860 1.2e-63 246.9 178 71.9
Gohir.A05G409000 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.2e-63 246.9 161 77.6
Ciclev10009690m.g Citrus clementina HOM05D006260 ORTHO05D007860 1.5e-63 246.5 178 73.0
Gohir.A05G408800 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.5e-63 246.5 178 73.0
SGA_v2.0_scaffold31G12783 Striga asiatica HOM05D006260 ORTHO05D007860 1.5e-63 246.5 167 74.3
Rhsim01G0114100 Rhododendron simsii HOM05D006260 ORTHO05D007860 2.0e-63 246.1 180 71.7
C07p57300 Brassica napus HOM05D006260 ORTHO05D007860 2.6e-63 245.7 167 72.5
Gohir.D04G006400 Gossypium hirsutum HOM05D006260 ORTHO05D007860 2.6e-63 245.7 178 72.5
Gorai.012G007800 Gossypium raimondii HOM05D006260 ORTHO05D007860 2.6e-63 245.7 178 72.5
Thecc.09G192000 Theobroma cacao HOM05D006260 ORTHO05D007860 2.6e-63 245.7 178 73.6
MD16G1245000 Malus domestica HOM05D006260 ORTHO05D007860 3.4e-63 245.4 176 73.3
CARHR109790 Cardamine hirsuta HOM05D006260 ORTHO05D007860 4.4e-63 245.0 178 69.7
Glyma.09G061600 Glycine max HOM05D006260 ORTHO05D007860 4.4e-63 245.0 161 77.0
BolC7t46199H Brassica oleracea HOM05D006260 ORTHO05D007860 5.8e-63 244.6 171 71.9
Medtr2g038390 Medicago truncatula HOM05D006260 ORTHO05D007860 5.8e-63 244.6 178 72.5
Potri.006G072600 Populus trichocarpa HOM05D006260 ORTHO05D007860 5.8e-63 244.6 178 71.3
A03p59290 Brassica napus HOM05D006260 ORTHO05D007860 7.6e-63 244.2 171 71.3
FAN22G1136 Fragaria x ananassa HOM05D006260 ORTHO05D007860 7.6e-63 244.2 173 72.3
Glyma.15G167900 Glycine max HOM05D006260 ORTHO05D007860 7.6e-63 244.2 159 77.4
Manes.14G161300 Manihot esculenta HOM05D006260 ORTHO05D007860 7.6e-63 244.2 152 80.3
Prupe.1G072000 Prunus persica HOM05D006260 ORTHO05D007860 7.6e-63 244.2 178 70.8
FAN12G1915 Fragaria x ananassa HOM05D006260 ORTHO05D007860 9.9e-63 243.8 173 72.3
BraA03t14986Z Brassica rapa HOM05D006260 ORTHO05D007860 1.3e-62 243.4 170 71.8
FAN07G2370 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.3e-62 243.4 173 72.3
Gohir.D04G006600 Gossypium hirsutum HOM05D006260 ORTHO05D007860 1.3e-62 243.4 178 71.9
Gorai.012G008000 Gossypium raimondii HOM05D006260 ORTHO05D007860 1.3e-62 243.4 178 71.9
Hma1.2p1_0478F.1_g161140 Hydrangea macrophylla HOM05D006260 ORTHO05D007860 1.3e-62 243.4 178 71.9
Carub.0003s3356 Capsella rubella HOM05D006260 ORTHO05D007860 1.7e-62 243.0 178 69.7
CAN.G1341.6 Capsicum annuum HOM05D006260 ORTHO05D007860 2.9e-62 242.3 178 71.9
Nitab4.5_0000257g0210 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.9e-62 242.3 179 70.4
MD16G1244900 Malus domestica HOM05D006260 ORTHO05D007860 3.8e-62 241.9 176 71.0
Lalb_Chr23g0276701 Lupinus albus HOM05D006260 ORTHO05D007860 4.9e-62 241.5 178 70.2
CiPaw.08G031300 Carya illinoinensis HOM05D006260 ORTHO05D007860 1.1e-61 240.4 178 68.5
Nitab4.5_0009368g0010 Nicotiana tabacum HOM05D006260 ORTHO05D007860 2.4e-61 239.2 179 69.3
Ca_02129_v3 Cicer arietinum L. HOM05D006260 ORTHO05D007860 5.4e-61 238.0 152 77.6
Cc05_g06400 Coffea canephora HOM05D006260 ORTHO05D007860 5.4e-61 238.0 169 71.0
Phvul.009G234400 Phaseolus vulgaris HOM05D006260 ORTHO05D007860 5.4e-61 238.0 178 69.7
SGA_v2.0_scaffold112G31634 Striga asiatica HOM05D006260 ORTHO05D007860 5.4e-61 238.0 151 76.8
PGR018G0003 Punica granatum HOM05D006260 ORTHO05D007860 7.1e-61 237.7 180 68.3
PGR142G0891 Punica granatum HOM05D006260 ORTHO05D007860 7.1e-61 237.7 180 68.3
PGR142G1877 Punica granatum HOM05D006260 ORTHO05D007860 7.1e-61 237.7 180 68.3
TAR383G0359 Trochodendron aralioides HOM05D006260 ORTHO05D007860 7.1e-61 237.7 175 70.3
Aqoxy7G02900 Aquilegia oxysepala HOM05D006260 ORTHO05D007860 9.3e-61 237.3 173 70.5
Lsat_1_v5_gn_7_55181 Lactuca sativa HOM05D006260 ORTHO05D007860 1.6e-60 236.5 152 76.3
vmacro20799 Vaccinium macrocarpon HOM05D006260 ORTHO05D007860 1.6e-60 236.5 167 71.3
Eucgr.C00083 Eucalyptus grandis HOM05D006260 ORTHO05D007860 7.8e-60 234.2 170 69.4
HanXRQChr09g0245351 Helianthus annuus HOM05D006260 ORTHO05D007860 1.3e-59 233.4 152 74.3
HPP92_027392 Vanilla planifolia HOM05D006260 ORTHO05D007860 8.7e-59 230.7 172 69.2
SHI03067 Sapria himalayana HOM05D006260 ORTHO05D007860 1.5e-58 229.9 152 75.7
CDE06G1002 Ceratophyllum demersum HOM05D006260 ORTHO05D007860 1.4e-56 223.4 139 79.9
AT2G19340 Arabidopsis thaliana HOM05D006260 ORTHO05D007860 5.3e-56 221.5 164 68.9
Manes.06G017400 Manihot esculenta HOM05D006260 ORTHO05D007860 5.3e-56 221.5 142 76.8
Peaxi162Scf00421g00071 Petunia axillaris HOM05D006260 ORTHO05D007860 9.0e-56 220.7 165 69.7
Zm00001eb112720 Zea mays HOM05D006260 ORTHO05D007860 1.2e-55 220.3 154 72.7
Zm00001eb169590 Zea mays HOM05D006260 ORTHO05D007860 1.2e-55 220.3 154 72.1
QL02p064675 Quercus lobata HOM05D006260 ORTHO05D007860 1.7e-54 216.5 162 67.3
CiPaw.07G199300 Carya illinoinensis HOM05D006260 ORTHO05D007860 3.2e-53 212.2 157 68.8
FAN17G2269 Fragaria x ananassa HOM05D006260 ORTHO05D007860 1.2e-52 210.3 155 69.7
Mapoly0039s0076 Marchantia polymorpha HOM05D006260 ORTHO05D007860 1.8e-51 206.5 152 67.1
SEGI_37789 Sequoiadendron giganteum HOM05D006260 ORTHO05D007860 1.8e-51 206.5 161 67.1
Cpa.g.sc115.60 Carica papaya HOM05D006260 ORTHO05D007860 1.1e-50 203.8 120 83.3
PSO170G1526 Papaver somniferum HOM05D006260 ORTHO05D007860 1.9e-50 203.0 131 76.3
TAR626G1894 Trochodendron aralioides HOM05D006260 ORTHO05D007860 4.3e-50 201.8 132 77.3
Sabra06G0054000 Salix brachista HOM05D006260 ORTHO05D007860 5.3e-48 194.9 120 80.0
CBR_g37526 Chara braunii HOM05D006260 ORTHO05D007860 1.2e-47 193.7 152 62.5
Sed0019929 Sechium edule HOM05D006260 ORTHO05D007860 2.0e-47 193.0 146 68.5
EL10Ac8g19294 Beta vulgaris HOM05D006260 ORTHO05D007860 3.8e-46 188.7 107 87.9
AUR62031268 Chenopodium quinoa HOM05D006260 ORTHO05D007860 4.9e-46 188.3 107 87.9
SMO329G0049 Selaginella moellendorffii HOM05D006260 ORTHO05D007860 4.2e-45 185.3 152 63.2
Sabra18G0114100 Salix brachista HOM05D006260 ORTHO05D007860 2.7e-44 182.6 108 84.3
AagrBONN_evm.TU.Sc2ySwM_362.1716 Anthoceros agrestis HOM05D006260 ORTHO05D007860 6.0e-44 181.4 152 59.2
ECA240G0773 Erigeron canadensis HOM05D006260 ORTHO05D007860 7.9e-44 181.0 121 72.7
Pp3c5_8110 Physcomitrium patens HOM05D006260 ORTHO05D007860 3.9e-43 178.7 131 63.4
BcaNung00497 Brassica carinata HOM05D006260 ORTHO05D007860 2.4e-40 169.5 129 68.2
Lj5C609T1 Lonicera japonica HOM05D006260 ORTHO05D007860 1.8e-32 143.3 91 75.8
Cre12.g528150 Chlamydomonas reinhardtii HOM05D006260 ORTHO05D007860 3.6e-28 129.0 123 49.6
TWI39G0723 Tripterygium wilfordii HOM05D006260 ORTHO05D007860 1.1e-16 90.9 106 50.0
MD13G1241300 Malus domestica HOM05D006260 ORTHO05D249159 2.2e-09 66.6 118 43.2


User provided reference genes

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