Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 5.1e-110 401.7 320 100.0
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 1.3e-81 307.4 320 79.4
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 1.2e-63 247.7 317 73.2
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 8.0e-63 245.0 317 74.1
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.0e-62 244.6 317 64.7
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 2.3e-62 243.4 317 73.5
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 6.8e-62 241.9 317 77.6
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.4e-61 239.6 317 64.4
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 4.4e-61 239.2 317 77.6
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 4.4e-61 239.2 318 73.9
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 5.7e-61 238.8 319 72.7
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 9.8e-61 238.0 360 50.8
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 1.4e-59 234.2 319 73.7
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.4e-59 234.2 319 74.0
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.8e-59 233.8 319 74.3
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.8e-59 233.8 319 74.3
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.8e-59 233.8 319 74.3
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.8e-59 233.8 319 74.3
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.4e-59 233.4 316 74.1
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.1e-59 232.6 319 73.0
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 5.4e-59 232.3 319 74.0
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 9.1e-59 231.5 314 68.8
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 1.2e-58 231.1 317 66.2
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 1.2e-58 231.1 317 72.9
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.6e-58 230.7 324 55.6
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 2.7e-58 229.9 317 68.5
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 3.5e-58 229.6 319 73.4
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 4.5e-58 229.2 317 66.2
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 5.9e-58 228.8 317 71.0
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 5.9e-58 228.8 319 69.3
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 7.7e-58 228.4 317 66.6
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 1.7e-57 227.3 317 65.6
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.3e-57 226.9 317 65.6
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.3e-57 226.9 317 65.3
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 2.3e-57 226.9 300 73.0
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 5.0e-57 225.7 316 71.5
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 6.5e-57 225.3 317 71.0
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 6.5e-57 225.3 319 72.1
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.1e-56 224.6 319 72.1
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.1e-56 224.6 317 65.3
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.5e-56 224.2 328 72.9
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 4.2e-56 222.6 317 72.2
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 9.5e-56 221.5 317 68.1
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.2e-55 221.1 316 74.1
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.0e-54 218.0 321 71.3
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 1.0e-54 218.0 317 67.2
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 3.0e-54 216.5 319 67.1
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 6.8e-54 215.3 318 69.2
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 8.8e-54 214.9 316 74.7
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.2e-53 214.5 317 64.7
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 1.2e-53 214.5 317 64.7
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.2e-53 214.5 317 72.2
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 1.5e-53 214.2 317 73.8
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 3.4e-53 213.0 321 71.3
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.3e-52 211.1 326 68.4
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 1.3e-52 211.1 322 63.4
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.3e-52 211.1 321 53.0
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 1.7e-52 210.7 322 64.9
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.7e-52 210.7 307 69.7
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 1.7e-52 210.7 317 65.3
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 3.7e-52 209.5 320 54.1
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 4.9e-52 209.1 224 71.0
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 6.3e-52 208.8 320 71.6
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 8.3e-52 208.4 316 72.8
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.4e-51 207.6 317 73.5
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 1.8e-51 207.2 318 61.0
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 5.4e-51 205.7 317 60.9
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 9.2e-51 204.9 312 73.1
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 1.6e-50 204.1 318 70.4
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 4.5e-50 202.6 331 67.7
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.9e-50 202.2 317 64.7
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 1.0e-49 201.4 319 65.5
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 1.0e-49 201.4 319 65.5
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.3e-49 201.1 262 76.3
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 2.9e-49 199.9 317 68.5
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 3.8e-49 199.5 314 61.1
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 3.8e-49 199.5 317 62.8
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 3.8e-49 199.5 318 68.2
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 8.6e-49 198.4 317 71.0
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.9e-48 197.2 308 65.6
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 1.9e-48 197.2 321 69.8
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 7.3e-48 195.3 330 67.9
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.2e-47 194.5 317 64.4
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.2e-47 194.5 317 67.8
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.1e-47 193.7 317 67.8
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 3.6e-47 193.0 324 69.1
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.7e-47 192.6 307 68.7
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 6.1e-47 192.2 319 70.2
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 1.8e-46 190.7 311 61.4
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 1.8e-46 190.7 311 61.4
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.3e-46 190.3 294 67.7
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 4.0e-46 189.5 311 65.0
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 5.2e-46 189.1 328 64.6
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 8.9e-46 188.3 314 53.8
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 8.9e-46 188.3 319 66.5
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 2.6e-45 186.8 319 63.0
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.6e-45 186.8 316 68.4
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 5.7e-45 185.7 309 71.5
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 1.3e-44 184.5 317 63.1
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.2e-44 183.7 319 66.5
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 2.2e-44 183.7 319 67.4
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.9e-44 183.3 319 66.1
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.7e-44 183.0 310 53.5
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.7e-44 183.0 310 63.2
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 1.4e-43 181.0 315 56.2
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 3.2e-43 179.9 309 69.9
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 5.4e-43 179.1 325 67.4
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 5.4e-43 179.1 318 62.3
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 7.8e-42 175.3 316 51.6
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.0e-41 174.9 317 66.2
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.7e-41 174.1 315 61.0
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 2.3e-41 173.7 299 71.2
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 3.9e-41 172.9 297 68.7
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 1.5e-40 171.0 293 70.0
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 3.3e-40 169.9 297 68.0
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.3e-40 169.9 319 64.9
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 5.6e-40 169.1 327 58.4
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 7.3e-40 168.7 311 64.6
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 7.3e-40 168.7 315 68.6
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 9.5e-40 168.3 239 81.2
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 9.5e-40 168.3 318 56.9
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 1.6e-39 167.5 321 60.4
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 1.6e-39 167.5 309 68.9
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 2.8e-39 166.8 319 60.8
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.6e-39 166.4 310 65.2
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 3.6e-39 166.4 299 70.6
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 3.6e-39 166.4 310 61.6
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.3e-38 163.7 307 68.1
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 3.1e-38 163.3 311 65.3
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 4.0e-38 162.9 311 66.6
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 5.2e-38 162.5 311 66.6
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 5.2e-38 162.5 311 66.6
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 5.2e-38 162.5 262 67.9
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 8.9e-38 161.8 311 66.9
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.2e-37 161.4 323 65.6
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 5.8e-37 159.1 306 67.0
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 5.8e-37 159.1 319 64.9
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 5.8e-37 159.1 319 66.5
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.5e-37 158.7 317 66.9
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 9.8e-37 158.3 169 58.0
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 9.8e-37 158.3 290 62.8
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-36 157.9 249 80.7
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.7e-36 157.5 313 69.0
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 2.2e-36 157.1 320 63.8
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.4e-35 153.7 295 69.2
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.4e-35 153.7 302 67.9
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 3.5e-34 149.8 311 68.5
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 1.0e-33 148.3 272 57.7
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.7e-33 147.5 307 66.8
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.7e-33 147.5 317 58.7
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 2.3e-33 147.1 318 39.6
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 3.0e-33 146.7 309 67.0
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 6.6e-33 145.6 258 70.5
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 1.5e-32 144.4 323 56.7
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 1.2e-31 141.4 319 58.3
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 1.2e-31 141.4 309 61.2
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 2.1e-31 140.6 315 57.8
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 4.7e-31 139.4 318 63.8
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 1.1e-30 138.3 318 60.1
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 1.1e-30 138.3 318 60.1
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 5.2e-30 136.0 309 49.2
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 1.2e-29 134.8 257 51.4
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.2e-29 134.8 257 51.4
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.2e-29 134.8 257 51.4
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 9.9e-29 131.7 319 57.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.7e-28 129.8 170 57.1
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.6e-26 124.4 253 62.8
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 2.1e-26 124.0 312 59.9
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 8.1e-23 112.1 318 42.5
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.8e-22 110.9 114 54.4
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 5.2e-22 109.4 161 51.6
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 2.6e-21 107.1 318 54.1
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 2.9e-20 103.6 70 77.1
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 3.8e-20 103.2 157 59.2
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 4.1e-19 99.8 248 63.3
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 3.5e-18 96.7 307 48.2
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 3.5e-18 96.7 307 48.2
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 3.5e-18 96.7 307 48.2
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 2.5e-16 90.5 151 57.6
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 7.3e-16 89.0 166 50.6
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 4.7e-15 86.3 149 52.3
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 6.9e-14 82.4 157 45.2
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 2.6e-13 80.5 116 60.3
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 5.8e-13 79.3 87 49.4
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 3.8e-12 76.6 221 63.3


User provided reference genes

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