Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 0.0e+00 1132.9 583 100.0
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.4e-291 1005.0 576 90.3
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.3e-284 982.6 568 88.7
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.8e-276 954.9 569 85.9
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.6e-271 939.1 568 85.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 5.6e-264 914.1 570 81.9
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 2.6e-261 905.2 574 79.6
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.2e-260 902.1 538 84.8
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.6e-258 896.0 540 83.5
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.1e-258 895.6 562 80.8
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 6.0e-258 894.0 576 79.7
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 6.0e-258 894.0 562 79.2
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.0e-257 891.7 535 83.0
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 8.6e-257 890.2 563 79.8
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 8.6e-257 890.2 576 78.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.9e-256 889.0 520 84.6
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.9e-256 889.0 572 79.0
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.5e-256 888.6 533 83.1
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 4.3e-256 887.9 526 83.8
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 5.6e-256 887.5 568 78.9
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 7.3e-256 887.1 572 77.8
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.2e-255 886.3 540 81.3
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 6.2e-255 884.0 569 79.3
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 6.2e-255 884.0 511 85.3
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 3.1e-254 881.7 555 79.6
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.0e-254 881.3 571 78.5
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.2e-254 880.9 576 78.3
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 5.2e-254 880.9 514 84.8
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.2e-253 879.8 552 79.2
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.2e-253 879.8 571 77.9
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.5e-253 879.4 579 77.9
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.5e-253 879.4 561 79.9
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.5e-253 879.4 580 77.9
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.6e-253 878.6 561 79.7
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.6e-253 878.6 574 77.7
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 2.6e-253 878.6 563 78.5
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 3.4e-253 878.2 535 81.5
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 9.9e-253 876.7 567 78.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.2e-252 875.5 584 76.9
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.2e-252 875.5 571 77.9
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 4.9e-252 874.4 545 80.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 8.3e-252 873.6 542 80.6
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.9e-251 872.5 569 78.4
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.9e-251 872.5 541 80.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.9e-251 872.5 541 80.6
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 4.1e-251 871.3 541 80.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 4.1e-251 871.3 541 80.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 4.1e-251 871.3 541 80.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.4e-251 870.9 568 77.5
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.4e-251 870.9 564 78.0
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.2e-251 870.2 561 79.1
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.2e-250 869.8 560 77.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.1e-250 869.0 551 80.0
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.1e-250 869.0 541 80.8
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-250 869.0 575 77.4
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-250 869.0 574 77.2
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 2.7e-250 868.6 530 81.7
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 3.5e-250 868.2 530 80.9
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 4.6e-250 867.8 535 81.5
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.6e-250 867.8 561 79.3
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 6.0e-250 867.5 566 77.9
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.3e-249 866.3 546 80.0
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.3e-249 866.3 510 84.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.7e-249 865.9 550 80.0
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 3.0e-249 865.1 549 79.8
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.9e-249 864.8 549 80.0
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 5.1e-249 864.4 526 82.1
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.1e-248 863.2 573 76.8
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.3e-248 861.7 557 77.4
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 7.3e-248 860.5 573 76.6
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 1.6e-247 859.4 560 77.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.6e-247 858.2 557 76.8
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.4e-246 855.5 559 76.7
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.0e-246 854.7 519 81.3
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 6.8e-246 854.0 590 74.7
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.2e-245 853.2 579 75.3
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-245 852.0 579 74.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 4.4e-245 851.3 544 79.4
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.8e-244 848.2 562 76.3
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 6.4e-244 847.4 535 80.4
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.9e-243 845.9 538 78.8
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.4e-243 845.5 583 74.1
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 4.2e-243 844.7 528 79.9
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 4.2e-243 844.7 571 75.5
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 9.3e-243 843.6 571 75.8
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 6.0e-242 840.9 567 75.5
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 5.1e-241 837.8 575 73.7
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.1e-241 837.8 554 76.7
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 5.6e-240 834.3 546 76.6
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 7.3e-240 833.9 527 78.0
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.8e-239 832.0 579 73.9
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 6.2e-239 830.9 561 74.9
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-238 829.7 579 73.7
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.5e-237 826.2 573 74.9
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 7.6e-237 823.9 562 74.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.7e-236 822.8 512 80.3
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-233 813.5 550 76.4
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.6e-231 806.2 542 74.5
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 8.1e-231 803.9 566 73.0
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 8.1e-231 803.9 469 85.7
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.2e-227 792.0 465 84.9
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.4e-224 780.8 483 80.1
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.4e-222 776.5 561 73.3
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 4.0e-222 775.0 559 69.4
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.3e-220 770.0 527 74.4
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 3.3e-216 755.4 523 70.7
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 5.7e-216 754.6 524 71.4
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.1e-214 748.8 484 77.7
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 7.2e-211 737.6 569 66.1
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 5.7e-208 728.0 411 88.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.4e-198 696.8 446 76.0
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.8e-198 696.4 540 67.4
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 3.1e-198 695.7 443 77.2
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.0e-197 693.0 544 64.9
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-195 686.8 543 67.2
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 6.1e-194 681.4 538 63.6
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 7.4e-192 674.5 576 64.2
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 5.0e-188 661.8 582 62.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.7e-183 646.7 505 65.1
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.7e-183 645.6 489 64.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 2.9e-180 636.0 460 68.7
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.8e-175 618.6 554 61.7
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 7.7e-165 584.7 318 89.9
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 6.4e-159 565.1 451 63.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.2e-157 560.8 352 82.1
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 5.9e-157 558.5 502 60.0
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.0e-156 557.8 534 57.9
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.5e-152 543.9 503 56.5
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.4e-150 537.3 504 56.2
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.4e-150 535.4 504 55.8
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-149 533.1 503 55.5
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.7e-132 477.2 331 69.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.4e-126 456.8 501 49.9
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.3e-124 451.1 500 48.6
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 9.0e-113 411.8 605 45.0
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.2e-104 384.8 546 40.1
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.2e-94 350.1 428 47.0
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 4.5e-88 329.7 435 41.6
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-82 311.2 346 51.2
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.8e-71 273.5 157 87.9
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 9.1e-65 252.3 559 35.8
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.7e-64 250.8 182 65.9
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.7e-61 240.0 256 51.6
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.6e-51 207.6 401 36.4
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.0e-47 195.7 129 76.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.3e-44 184.5 509 31.8
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.0e-40 171.4 106 84.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.9e-39 167.2 117 76.1
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 5.6e-38 163.3 103 76.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 8.6e-31 139.4 147 52.4
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.7e-29 133.7 92 81.5
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 4.7e-29 133.7 83 84.3
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-26 124.8 80 76.2
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.8e-20 105.1 96 61.5
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 2.6e-19 101.3 80 68.8
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 3.2e-17 94.4 54 88.9
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 3.2e-17 94.4 65 73.8
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.6e-16 92.0 50 88.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.7e-15 88.6 73 67.1
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 4.3e-14 84.0 91 41.8
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 3.6e-13 80.9 91 51.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 4.0e-12 77.4 98 51.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-11 74.3 49 77.6
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 3.8e-10 70.9 43 79.1
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 7.1e-09 66.6 76 50.0
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.1e-08 65.1 52 61.5
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.7e-07 62.0 52 57.7
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.0e-07 61.2 46 56.5
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 3.3e-06 57.8 135 34.8


User provided reference genes

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