Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g228230 Amaranthus hybridus HOM05D029282 ORTHO05D002213 4.0e-65 252.3 259 100.0
AUR62033958 Chenopodium quinoa HOM05D029282 ORTHO05D002213 3.1e-17 93.2 294 43.2
AUR62029066 Chenopodium quinoa HOM05D029282 ORTHO05D002213 3.5e-16 89.7 294 41.5
EL10Ac8g19207 Beta vulgaris HOM05D029282 ORTHO05D002213 4.7e-13 79.3 279 46.2
ClCG03G015520 Citrullus lanatus HOM05D002237 ORTHO05D002213 9.2e-09 65.1 256 27.3
Gohir.D13G199000 Gossypium hirsutum HOM05D002237 ORTHO05D002213 3.5e-08 63.2 247 34.8
GSVIVG01023189001 Vitis vinifera HOM05D000101 ORTHO05D002559 4.5e-08 62.8 44 70.5
Gorai.013G227500 Gossypium raimondii HOM05D002237 ORTHO05D002213 1.0e-07 61.6 247 35.2
Sc08g0008500 Simmondsia chinensis HOM05D002237 ORTHO05D002213 2.3e-07 60.5 44 70.5
Aqoxy7G01205 Aquilegia oxysepala HOM05D002237 ORTHO05D002213 2.9e-07 60.1 49 69.4
Sed0011201 Sechium edule HOM05D002237 ORTHO05D002213 3.9e-07 59.7 241 31.1
PGSC0003DMG400035559 Solanum tuberosum HOM05D002237 ORTHO05D002213 5.0e-07 59.3 38 76.3
MELO3C015480.2 Cucumis melo HOM05D002237 ORTHO05D002213 6.6e-07 58.9 249 31.3
ATR0749G108 Amborella trichopoda HOM05D002237 ORTHO05D002213 8.6e-07 58.5 42 73.8
Lj7A676T37 Lonicera japonica HOM05D002237 ORTHO05D002213 1.1e-06 58.2 41 78.0
Gohir.A13G193250 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.5e-06 57.8 247 34.4
Medtr2g039320 Medicago truncatula HOM05D002237 ORTHO05D002213 1.5e-06 57.8 63 54.0
CiPaw.04G149200 Carya illinoinensis HOM05D002237 ORTHO05D002213 1.9e-06 57.4 60 60.0
Gohir.A07G011600 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.9e-06 57.4 43 74.4
Gohir.D07G011400 Gossypium hirsutum HOM05D002237 ORTHO05D002213 1.9e-06 57.4 43 74.4
Gorai.001G012100 Gossypium raimondii HOM05D002237 ORTHO05D002213 1.9e-06 57.4 43 74.4
CiPaw.03G215600 Carya illinoinensis HOM05D002237 ORTHO05D002213 2.5e-06 57.0 242 28.9
COL.COLO4_21062 Corchorus olitorius HOM05D002237 ORTHO05D002213 2.5e-06 57.0 37 73.0
FAN20G2042 Fragaria x ananassa HOM05D002237 ORTHO05D002213 2.5e-06 57.0 46 60.9
FAN27G2230 Fragaria x ananassa HOM05D002237 ORTHO05D002213 2.5e-06 57.0 46 60.9
Glyma.13G104500 Glycine max HOM05D002237 ORTHO05D002213 2.5e-06 57.0 45 66.7
Oeu016763.1 Olea europaea HOM05D002237 ORTHO05D002213 2.5e-06 57.0 41 73.2
Thecc.09G054200 Theobroma cacao HOM05D002237 ORTHO05D002213 2.5e-06 57.0 37 73.0
Dinv36772 Davidia involucrata HOM05D002237 ORTHO05D002213 3.3e-06 56.6 239 27.2
MSTRG.19510 Avicennia marina HOM05D002237 ORTHO05D002213 4.3e-06 56.2 48 60.4
CANSAT25G0876 Cannabis sativa HOM05D002237 ORTHO05D002213 4.3e-06 56.2 36 75.0
CsaV3_1G040530 Cucumis sativus L. HOM05D002237 ORTHO05D002213 4.3e-06 56.2 253 28.5
FvH4_1g07560 Fragaria vesca HOM05D002237 ORTHO05D002213 4.3e-06 56.2 39 79.5
FAN19G3195 Fragaria x ananassa HOM05D002237 ORTHO05D002213 4.3e-06 56.2 39 79.5
FAN26G0211 Fragaria x ananassa HOM05D002237 ORTHO05D002213 4.3e-06 56.2 39 79.5
FAN26G2487 Fragaria x ananassa HOM05D002237 ORTHO05D002213 4.3e-06 56.2 39 79.5
Glyma.14G095300 Glycine max HOM05D002237 ORTHO05D002213 4.3e-06 56.2 45 64.4
HanXRQChr07g0192621 Helianthus annuus HOM05D002237 ORTHO05D002213 4.3e-06 56.2 35 71.4
Oeu041232.1 Olea europaea HOM05D002237 ORTHO05D002213 4.3e-06 56.2 41 73.2
Oeu041233.1 Olea europaea HOM05D002237 ORTHO05D002213 4.3e-06 56.2 41 73.2
Peaxi162Scf01444g00003 Petunia axillaris HOM05D002237 ORTHO05D002213 4.3e-06 56.2 39 71.8
Psat1g140840 Pisum sativum HOM05D002237 ORTHO05D002213 4.3e-06 56.2 52 61.5
Thecc.09G088400 Theobroma cacao HOM05D002237 ORTHO05D002213 4.3e-06 56.2 43 74.4
Cfa003084 Carpinus fangiana HOM05D002237 ORTHO05D002213 5.6e-06 55.8 41 73.2
CiPaw.03G215500 Carya illinoinensis HOM05D002237 ORTHO05D002213 5.6e-06 55.8 51 64.7
Hma1.2p1_0163F.1_g073030 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 5.6e-06 55.8 44 65.9
Hma1.2p1_2410F.1_g321555 Hydrangea macrophylla HOM05D002237 ORTHO05D002213 5.6e-06 55.8 44 65.9
PSO210G0663 Papaver somniferum HOM05D002237 ORTHO05D002213 5.6e-06 55.8 49 59.2
PSO210G1183 Papaver somniferum HOM05D002237 ORTHO05D002213 5.6e-06 55.8 49 59.2
PSO210G3168 Papaver somniferum HOM05D002237 ORTHO05D002213 5.6e-06 55.8 49 59.2
Phvul.003G136600 Phaseolus vulgaris HOM05D002237 ORTHO05D002213 5.6e-06 55.8 35 77.1
Solyc08g065150.1 Solanum lycopersicum HOM05D002237 ORTHO05D002213 5.6e-06 55.8 36 77.8
Sopen08g018730 Solanum pennellii HOM05D002237 ORTHO05D002213 5.6e-06 55.8 36 77.8
COL.COLO4_18195 Corchorus olitorius HOM05D002237 ORTHO05D002213 7.3e-06 55.5 77 45.5
Haze_25915 Corylus avellana HOM05D002237 ORTHO05D002213 7.3e-06 55.5 38 78.9
CsaV3_4G035640 Cucumis sativus L. HOM05D002237 ORTHO05D002213 7.3e-06 55.5 46 67.4
Duzib150G1021 Durio zibethinus HOM05D002237 ORTHO05D002213 7.3e-06 55.5 37 73.0
Duzib168G2392 Durio zibethinus HOM05D002237 ORTHO05D002213 7.3e-06 55.5 29 93.1
Lalb_Chr22g0356091 Lupinus albus HOM05D002237 ORTHO05D002213 7.3e-06 55.5 34 76.5
RcHm_v2.0_Chr6g0310991 Rosa chinensis HOM05D002237 ORTHO05D002213 7.3e-06 55.5 42 59.5
CSS0010318 Camellia sinensis var. sinensis HOM05D002237 ORTHO05D002213 9.5e-06 55.1 30 86.7
ClCG05G017870 Citrullus lanatus HOM05D002237 ORTHO05D002213 9.5e-06 55.1 46 67.4
MELO3C016871.2 Cucumis melo HOM05D002237 ORTHO05D002213 9.5e-06 55.1 46 67.4
PGSC0003DMG400021389 Solanum tuberosum HOM05D002237 ORTHO05D002213 9.5e-06 55.1 41 73.2


User provided reference genes

Program Settings