Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.5e-262 907.1 473 100.0
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.4e-193 679.1 373 96.8
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 8.2e-149 531.2 495 60.8
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 4.8e-141 505.4 503 59.8
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.4e-132 477.2 481 55.7
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.1e-119 433.0 402 60.0
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.9e-117 425.6 402 60.0
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 2.5e-113 413.3 507 50.5
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.6e-102 376.7 503 50.5
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 3.9e-90 336.3 432 49.8
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 3.6e-88 329.7 507 45.4
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 8.1e-88 328.6 500 45.8
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.6e-86 323.6 424 48.8
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 4.9e-85 319.3 422 48.3
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.2e-84 316.6 464 44.2
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 5.4e-84 315.8 422 46.9
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 2.1e-83 313.9 487 44.8
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 2.7e-83 313.5 431 45.7
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 7.9e-83 312.0 416 47.8
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 2.3e-82 310.5 432 46.5
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 3.0e-82 310.1 437 46.0
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 6.7e-82 308.9 424 48.1
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.5e-81 307.8 422 46.7
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.5e-81 307.8 419 48.4
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.3e-81 306.6 440 45.9
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 5.6e-81 305.8 444 44.4
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 7.4e-81 305.4 444 45.0
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 2.1e-80 303.9 414 47.8
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.1e-79 301.6 533 40.0
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 3.1e-79 300.1 410 47.8
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.0e-79 299.7 418 46.7
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 4.0e-79 299.7 428 46.3
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.5e-78 297.7 450 43.6
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.4e-78 296.6 430 46.5
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 5.8e-78 295.8 442 42.8
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.3e-77 294.7 446 46.0
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.7e-77 294.3 411 47.7
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 1.4e-76 291.2 406 46.3
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.5e-76 289.3 467 43.7
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 9.3e-76 288.5 432 44.2
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.1e-75 287.3 467 43.5
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 4.6e-75 286.2 464 43.5
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 6.0e-75 285.8 406 47.0
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 6.0e-75 285.8 399 46.6
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 7.9e-75 285.4 417 47.0
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 7.9e-75 285.4 408 43.6
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 7.9e-75 285.4 376 49.2
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 1.8e-74 284.3 430 45.1
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 3.9e-74 283.1 463 43.2
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 6.7e-74 282.3 438 44.3
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 8.7e-74 282.0 419 45.3
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.9e-73 280.8 360 48.1
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.9e-73 280.8 336 50.9
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.5e-73 280.4 380 49.2
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 3.3e-73 280.0 402 46.3
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 4.3e-73 279.6 531 41.6
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 9.6e-73 278.5 533 40.0
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 9.6e-73 278.5 490 39.8
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 1.3e-72 278.1 376 47.6
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.3e-72 278.1 507 40.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 4.8e-72 276.2 418 44.3
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 1.8e-71 274.2 515 41.0
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 1.2e-70 271.6 388 47.2
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.2e-70 271.6 430 45.1
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.0e-70 270.8 502 40.8
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.0e-70 270.8 335 50.1
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 1.7e-69 267.7 334 48.5
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 6.5e-69 265.8 217 64.5
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 1.1e-68 265.0 525 39.8
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 4.2e-68 263.1 309 50.5
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 1.6e-67 261.2 537 37.2
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 3.5e-67 260.0 420 41.4
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 3.5e-67 260.0 509 36.9
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 6.0e-67 259.2 395 45.6
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 2.3e-66 257.3 404 42.3
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 5.1e-66 256.1 418 42.8
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 3.3e-65 253.4 411 41.8
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 4.3e-65 253.1 455 38.7
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 7.4e-65 252.3 507 37.3
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.3e-64 251.5 431 39.9
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 3.7e-64 250.0 546 37.0
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 8.2e-64 248.8 397 41.3
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 4.1e-63 246.5 436 40.1
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 6.9e-63 245.7 492 38.0
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.5e-62 244.6 430 40.9
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 2.0e-62 244.2 516 38.0
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 2.6e-62 243.8 359 43.7
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 5.9e-62 242.7 190 61.6
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.7e-61 241.1 325 44.9
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 2.2e-61 240.7 417 40.5
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 5.0e-61 239.6 420 42.1
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 6.5e-61 239.2 538 37.7
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 8.5e-61 238.8 452 37.6
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 9.4e-60 235.3 434 39.2
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 6.1e-59 232.6 325 43.7
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 6.1e-59 232.6 173 70.5
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 6.7e-58 229.2 324 44.4
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 6.7e-58 229.2 427 37.7
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.1e-57 228.4 426 38.0
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 1.1e-57 228.4 427 37.9
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.5e-57 227.3 400 42.0
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 7.4e-57 225.7 419 39.4
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 8.2e-56 222.2 311 42.1
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 5.9e-54 216.1 230 51.7
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.2e-53 214.2 382 40.8
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.3e-50 204.1 408 41.7
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 2.6e-49 200.7 185 55.1
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.0e-45 188.7 91 97.8
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.1e-44 185.3 139 63.3
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 6.1e-43 179.5 605 28.9
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.7e-40 171.4 177 50.3
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.7e-40 171.4 177 50.3
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.2e-38 165.2 323 39.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 1.5e-36 158.3 107 68.2
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 2.0e-33 147.9 139 54.7
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 3.6e-27 127.1 90 68.9
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 3.0e-26 124.0 128 55.5
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.4e-25 120.6 63 95.2
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.8e-23 114.8 289 36.0
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 1.9e-20 104.8 170 35.9
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 1.2e-19 102.1 62 77.4
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 4.7e-19 100.1 63 76.2
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 6.1e-19 99.8 463 25.5
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.4e-18 98.6 62 79.0
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.3e-18 97.8 63 73.0
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 5.2e-18 96.7 291 28.2
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 3.1e-15 87.4 82 48.8
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 6.1e-11 73.2 281 28.1
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.0e-06 58.2 234 28.2


User provided reference genes

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