Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 4.8e-117 424.9 272 100.0
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 7.9e-96 354.4 270 68.9
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.0e-91 339.7 272 83.5
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.2e-88 330.5 269 79.9
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 3.5e-83 312.4 263 81.0
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.2e-80 303.9 271 63.8
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.0e-79 300.8 273 66.7
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 3.0e-79 299.3 246 69.1
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.8e-79 298.1 248 63.3
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.2e-78 297.4 249 61.8
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.2e-78 297.4 272 57.7
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.4e-78 295.8 242 67.8
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 9.8e-78 294.3 272 61.4
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 9.8e-78 294.3 254 59.4
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 9.8e-78 294.3 248 61.7
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 9.8e-78 294.3 249 60.6
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.3e-77 293.9 257 59.1
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 2.2e-77 293.1 248 61.3
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 2.2e-77 293.1 248 61.3
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.8e-77 292.7 272 58.1
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.8e-77 292.7 269 56.5
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 4.8e-77 292.0 249 61.8
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.1e-76 290.8 269 55.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.1e-76 290.8 259 56.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.1e-76 290.8 259 56.8
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.4e-76 290.4 250 59.6
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.4e-76 290.4 271 56.5
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.8e-76 290.0 264 57.6
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.1e-76 289.3 255 57.3
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 4.1e-76 288.9 250 60.8
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 5.4e-76 288.5 273 72.9
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.4e-76 288.5 249 62.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 7.0e-76 288.1 276 72.1
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 9.1e-76 287.7 248 59.7
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 9.1e-76 287.7 255 56.9
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 9.1e-76 287.7 255 57.3
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 9.1e-76 287.7 255 57.3
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 9.1e-76 287.7 269 63.2
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.7e-75 286.2 270 55.9
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 2.7e-75 286.2 243 59.7
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 2.7e-75 286.2 273 56.4
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.7e-75 286.2 275 56.7
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.5e-75 285.8 250 58.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 7.7e-75 284.6 251 58.6
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.3e-74 283.9 300 60.3
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.7e-74 283.5 251 59.4
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.7e-74 283.5 248 66.5
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 3.8e-74 282.3 256 57.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 6.5e-74 281.6 250 57.6
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 6.5e-74 281.6 258 64.7
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.5e-73 279.6 248 57.7
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 4.2e-73 278.9 258 55.4
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.2e-73 278.1 301 59.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 7.2e-73 278.1 251 58.2
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 7.2e-73 278.1 238 59.7
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 9.4e-73 277.7 251 58.2
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.2e-72 277.3 249 57.0
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.7e-72 276.2 269 55.0
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 3.6e-72 275.8 270 54.4
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 8.0e-72 274.6 274 53.6
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.3e-71 273.1 295 51.5
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 6.8e-71 271.6 252 55.6
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 6.8e-71 271.6 255 58.0
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 8.8e-71 271.2 254 55.1
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.5e-70 270.4 248 57.3
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.6e-70 269.6 252 55.2
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 3.4e-70 269.2 250 55.6
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-70 268.9 252 55.2
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 5.7e-70 268.5 250 55.6
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 7.5e-70 268.1 245 57.6
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 3.7e-69 265.8 286 51.7
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.4e-68 263.8 252 54.4
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 2.4e-68 263.1 273 52.7
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 2.4e-68 263.1 253 53.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 4.1e-68 262.3 251 57.0
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.2e-67 260.8 247 55.1
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.7e-67 258.1 266 51.9
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.7e-67 258.1 266 51.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.0e-66 257.7 297 49.5
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.0e-66 257.7 251 53.8
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.7e-66 256.9 268 52.2
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.3e-66 256.5 254 53.9
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.3e-66 256.5 253 52.2
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 5.0e-66 255.4 268 53.0
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 6.6e-66 255.0 272 66.9
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 8.6e-66 254.6 274 51.1
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.1e-65 254.2 241 76.3
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.5e-65 253.1 268 52.6
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.5e-65 253.1 270 50.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 5.6e-65 251.9 245 60.4
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 1.2e-64 250.8 252 52.8
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.1e-64 250.0 251 63.3
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.8e-64 249.6 270 51.9
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-63 246.9 248 52.8
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 2.3e-63 246.5 249 51.8
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 4.0e-63 245.7 145 80.0
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.2e-62 244.2 264 48.9
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.9e-61 239.6 145 77.9
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.4e-61 238.4 272 48.9
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 1.1e-60 237.7 239 50.2
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.4e-60 237.3 157 73.9
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.7e-59 233.0 269 48.3
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.2e-54 217.6 301 52.5
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.3e-50 204.1 250 45.6
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 9.5e-49 198.0 204 52.9
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.1e-47 194.5 248 44.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 6.8e-47 191.8 248 45.6
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.8e-47 191.8 255 43.9
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 3.7e-45 186.0 213 68.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-34 149.8 85 81.2
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 8.1e-32 141.7 166 48.8
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.2e-30 137.9 239 38.1
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.4e-28 131.0 344 34.3
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 7.1e-28 128.6 139 49.6
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-27 127.9 131 52.7
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.8e-27 125.2 76 78.9
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.0e-26 123.2 156 44.9
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 3.1e-23 113.2 160 41.2
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.9e-23 112.1 171 40.9
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.8e-21 106.3 72 70.8
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.7e-13 80.9 43 83.7
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.4e-13 79.0 38 89.5
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 2.7e-11 73.6 153 32.7
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 6.0e-11 72.4 67 50.7
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 4.8e-08 62.8 68 45.6
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 3.1e-07 60.1 58 51.7
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-06 58.2 65 46.2
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 5.8e-06 55.8 77 41.6
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 5.8e-06 55.8 37 67.6
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 5.8e-06 55.8 37 67.6


User provided reference genes

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