Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.5e-183 644.8 325 100.0
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.1e-123 444.1 328 71.6
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 8.8e-118 427.6 339 66.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.5e-114 415.2 286 75.2
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.2e-93 347.4 334 56.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.4e-91 339.7 329 55.3
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 7.0e-91 338.2 336 55.4
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.9e-89 332.4 330 56.4
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 8.6e-89 331.3 254 63.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.9e-88 330.1 332 54.5
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 7.3e-88 328.2 318 54.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.6e-87 327.0 330 53.3
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 2.8e-87 326.2 329 54.1
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.1e-86 324.3 331 53.8
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.1e-86 324.3 303 56.4
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.4e-86 323.9 302 57.6
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.8e-86 323.6 337 53.4
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 4.0e-86 322.4 330 52.4
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.2e-86 322.0 333 52.9
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.5e-85 320.5 329 51.7
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.5e-85 320.5 311 55.6
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.6e-85 319.7 330 53.9
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 5.8e-85 318.5 328 52.1
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 7.5e-85 318.2 253 63.6
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.3e-84 317.4 262 59.5
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.4e-84 315.1 304 56.2
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 6.4e-84 315.1 309 55.7
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 8.3e-84 314.7 333 53.2
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-83 313.9 283 55.1
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.9e-83 313.5 302 55.6
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.9e-83 313.5 277 57.8
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.2e-83 312.8 255 61.2
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.1e-83 312.4 252 60.3
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 4.1e-83 312.4 310 53.5
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.4e-83 312.0 323 51.7
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.4e-83 312.0 283 55.5
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 5.4e-83 312.0 318 52.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 9.2e-83 311.2 255 60.8
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 9.2e-83 311.2 243 62.6
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-82 310.8 252 61.5
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.6e-82 310.5 256 62.1
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 2.1e-82 310.1 255 60.8
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.7e-82 309.7 257 59.1
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.5e-82 309.3 278 55.8
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.0e-82 308.5 255 60.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 7.8e-82 308.1 322 51.6
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 7.8e-82 308.1 249 60.2
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.0e-81 307.8 270 60.4
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.0e-81 307.8 330 52.7
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.0e-81 307.8 264 59.8
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.3e-81 306.6 332 50.6
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 3.9e-81 305.8 251 62.5
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 5.1e-81 305.4 288 54.2
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.1e-81 305.4 324 49.1
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 6.6e-81 305.1 313 50.5
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.6e-81 305.1 329 48.6
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.6e-81 305.1 329 48.6
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 6.6e-81 305.1 251 62.2
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 8.6e-81 304.7 274 57.3
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 8.6e-81 304.7 242 61.6
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 8.6e-81 304.7 317 53.0
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 8.6e-81 304.7 252 60.7
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 8.6e-81 304.7 249 57.8
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.5e-80 303.9 248 61.7
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.9e-80 303.5 332 49.4
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.9e-80 303.5 327 51.7
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.6e-80 302.0 236 67.4
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 5.6e-80 302.0 331 52.6
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.6e-80 302.0 315 52.7
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 7.3e-80 301.6 328 49.1
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.3e-80 301.6 272 57.4
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 9.5e-80 301.2 307 53.4
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 9.5e-80 301.2 259 59.8
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.2e-79 300.8 326 51.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.2e-79 300.8 307 53.4
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.6e-79 300.4 253 60.1
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.6e-79 300.4 247 59.5
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.8e-79 299.7 310 53.5
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.8e-79 299.7 317 52.1
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.7e-79 298.9 247 59.5
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 4.7e-79 298.9 262 57.6
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 6.2e-79 298.5 327 49.5
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 6.2e-79 298.5 334 48.2
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 8.1e-79 298.1 280 54.6
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.1e-79 298.1 261 55.9
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.1e-79 298.1 276 56.5
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.1e-78 297.7 334 50.9
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.8e-78 297.0 253 59.3
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.8e-78 297.0 256 59.0
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.2e-78 295.4 330 48.8
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 5.2e-78 295.4 280 54.3
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 5.2e-78 295.4 268 54.9
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.2e-78 295.4 257 57.6
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 6.8e-78 295.0 254 58.7
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 8.9e-78 294.7 325 48.9
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 8.9e-78 294.7 327 48.0
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.2e-77 294.3 300 54.0
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.2e-77 294.3 300 54.0
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.2e-77 294.3 348 49.4
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.5e-77 293.9 336 48.8
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 2.0e-77 293.5 281 53.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.0e-77 293.5 322 48.8
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 2.6e-77 293.1 254 58.7
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 7.6e-77 291.6 337 46.3
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 9.9e-77 291.2 326 50.9
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.3e-76 290.8 254 57.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.3e-76 290.8 250 60.0
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.7e-76 290.4 270 55.9
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 2.2e-76 290.0 321 48.9
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 2.2e-76 290.0 268 53.7
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 4.9e-76 288.9 328 47.9
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.9e-76 288.9 265 55.5
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.4e-76 288.5 318 49.1
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 6.4e-76 288.5 329 47.4
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-75 287.3 301 49.8
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.4e-75 287.3 321 48.6
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.9e-75 287.0 330 49.1
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 3.2e-75 286.2 281 52.0
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 3.2e-75 286.2 281 52.0
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 5.4e-75 285.4 251 59.0
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 7.1e-75 285.0 260 54.2
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 9.2e-75 284.6 280 54.3
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 1.2e-74 284.3 303 48.8
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.2e-74 284.3 310 48.7
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.6e-74 283.9 260 54.2
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.6e-74 283.9 248 57.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.1e-74 283.5 251 59.0
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 2.1e-74 283.5 332 48.8
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 3.5e-74 282.7 253 56.5
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 3.5e-74 282.7 299 49.5
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 7.8e-74 281.6 258 53.1
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.0e-73 281.2 329 48.3
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.7e-73 280.4 251 54.6
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.7e-73 280.4 310 49.0
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.3e-73 280.0 301 50.5
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.3e-73 280.0 261 52.5
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 3.0e-73 279.6 255 52.5
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 4.3e-72 275.8 259 53.3
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 5.6e-72 275.4 254 52.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.2e-71 274.2 324 49.7
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 6.2e-71 271.9 288 49.7
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.4e-69 266.2 257 50.6
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 9.9e-69 264.6 323 44.3
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 6.0e-66 255.4 328 45.1
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.6e-65 251.9 254 51.2
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 2.4e-62 243.4 285 48.4
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.5e-61 240.7 183 60.7
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 9.9e-61 238.0 266 47.7
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 4.2e-59 232.6 328 41.2
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 7.1e-59 231.9 353 43.3
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.2e-58 231.1 157 67.5
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 4.6e-58 229.2 256 45.7
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.3e-57 227.6 210 54.8
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 8.7e-57 224.9 160 63.1
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 6.9e-54 215.3 199 53.3
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.3e-49 200.3 183 53.6
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-44 184.5 154 55.8
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.7e-44 184.1 208 51.0
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-43 181.0 137 63.5
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 6.7e-41 172.2 161 53.4
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.6e-39 167.5 177 48.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.4e-38 164.5 219 46.6
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 6.9e-38 162.2 255 36.5
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 4.6e-34 149.4 227 41.4
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 5.7e-32 142.5 135 55.6
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.3e-31 141.4 277 37.5
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.2e-29 134.8 91 68.1
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 3.4e-29 133.3 126 57.9
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.7e-25 119.0 80 70.0
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 7.4e-24 115.5 93 61.3
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 6.5e-20 102.4 77 63.6
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 6.1e-18 95.9 115 42.6
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.0e-17 95.1 85 54.1
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 4.8e-15 86.3 77 54.5
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 8.8e-09 65.5 56 51.8


User provided reference genes

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