Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g224600 Amaranthus hybridus HOM05D000191 ORTHO05D013416 9.1e-26 119.8 75 100.0
AUR62011186 Chenopodium quinoa HOM05D000191 ORTHO05D000122 4.4e-12 74.3 48 75.0
AUR62013298 Chenopodium quinoa HOM05D002410 ORTHO05D002805 1.3e-11 72.8 47 74.5
EL10Ac8g18734 Beta vulgaris HOM05D000191 ORTHO05D000122 1.7e-11 72.4 48 72.9
Aqoxy7G03623 Aquilegia oxysepala HOM05D000191 ORTHO05D000122 6.3e-11 70.5 48 70.8
Aqoxy7G00935 Aquilegia oxysepala HOM05D000191 ORTHO05D013416 8.3e-11 70.1 50 66.0
GSVIVG01012806001 Vitis vinifera HOM05D000191 ORTHO05D000122 8.3e-11 70.1 47 72.3
Ah.09g224620 Amaranthus hybridus HOM05D000191 ORTHO05D000122 1.8e-10 68.9 48 70.8
Eucgr.L02716 Eucalyptus grandis HOM05D000191 ORTHO05D000122 1.8e-10 68.9 48 70.8
TAR626G1808 Trochodendron aralioides HOM05D000191 ORTHO05D000122 2.4e-10 68.6 47 68.1
GSVIVG01012808001 Vitis vinifera HOM05D000191 ORTHO05D000122 2.4e-10 68.6 47 68.1
Rhsim02G0203000 Rhododendron simsii HOM05D000191 ORTHO05D013416 3.1e-10 68.2 49 65.3
TAR383G0365 Trochodendron aralioides HOM05D000191 ORTHO05D000122 3.1e-10 68.2 53 64.2
Eucgr.E03525 Eucalyptus grandis HOM05D000191 ORTHO05D000122 4.1e-10 67.8 48 68.8
FAN19G0087 Fragaria x ananassa HOM05D000191 ORTHO05D000122 7.0e-10 67.0 51 60.8
FAN23G1501 Fragaria x ananassa HOM05D000191 ORTHO05D000122 7.0e-10 67.0 51 60.8
FAN26G0710 Fragaria x ananassa HOM05D000191 ORTHO05D000122 7.0e-10 67.0 51 60.8
Aqoxy7G03620 Aquilegia oxysepala HOM05D000191 ORTHO05D013416 1.6e-09 65.9 48 66.7
CANSAT54G2507 Cannabis sativa HOM05D000191 ORTHO05D000122 1.6e-09 65.9 48 60.4
PSO170G1096 Papaver somniferum HOM05D000191 ORTHO05D000122 2.7e-09 65.1 48 64.6
GSVIVG01012805001 Vitis vinifera HOM05D000191 ORTHO05D000122 3.5e-09 64.7 47 68.1
GSVIVG01012807001 Vitis vinifera HOM05D000191 ORTHO05D000122 3.5e-09 64.7 47 68.1
FvH4_1g02510 Fragaria vesca HOM05D000191 ORTHO05D000122 4.5e-09 64.3 48 60.4
GSVIVG01012820001 Vitis vinifera HOM05D000191 ORTHO05D000122 4.5e-09 64.3 48 64.6
FAN02G3126 Fragaria x ananassa HOM05D000191 ORTHO05D013416 5.9e-09 63.9 49 61.2
FAN09G0195 Fragaria x ananassa HOM05D000191 ORTHO05D013416 5.9e-09 63.9 49 61.2
Prupe.1G483100 Prunus persica HOM05D000191 ORTHO05D000122 5.9e-09 63.9 46 67.4
PGR031G3336 Punica granatum HOM05D000191 ORTHO05D000122 5.9e-09 63.9 49 61.2
QL02p090116 Quercus lobata HOM05D000191 ORTHO05D000122 5.9e-09 63.9 48 60.4
MD04G1243400 Malus domestica HOM05D000191 ORTHO05D000122 7.7e-09 63.5 45 66.7
CiPaw.03G249400 Carya illinoinensis HOM05D000191 ORTHO05D000122 1.0e-08 63.2 48 60.4
Gohir.D13G206500 Gossypium hirsutum HOM05D000191 ORTHO05D000122 1.0e-08 63.2 47 59.6
MD02G1022500 Malus domestica HOM05D000191 ORTHO05D000122 1.0e-08 63.2 48 60.4
TWI34G1072 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 1.0e-08 63.2 46 65.2
Eucgr.E03530 Eucalyptus grandis HOM05D000191 ORTHO05D000122 1.3e-08 62.8 48 64.6
Eucgr.H01381 Eucalyptus grandis HOM05D000191 ORTHO05D000122 1.3e-08 62.8 48 60.4
Gohir.A06G053300 Gossypium hirsutum HOM05D000191 ORTHO05D000122 1.3e-08 62.8 48 62.5
Gorai.010G060600 Gossypium raimondii HOM05D000191 ORTHO05D000122 1.3e-08 62.8 48 62.5
RcHm_v2.0_Chr2g0087541 Rosa chinensis HOM05D000191 ORTHO05D000122 1.3e-08 62.8 51 56.9
FAN28G2719 Fragaria x ananassa HOM05D000191 ORTHO05D000122 1.7e-08 62.4 49 61.2
PSO210G4449 Papaver somniferum HOM05D000191 ORTHO05D000122 1.7e-08 62.4 48 66.7
Phvul.003G169600 Phaseolus vulgaris HOM05D000191 ORTHO05D000122 1.7e-08 62.4 48 62.5
Prupe.7G249500 Prunus persica HOM05D000191 ORTHO05D000122 1.7e-08 62.4 48 62.5
RcHm_v2.0_Chr2g0087521 Rosa chinensis HOM05D000191 ORTHO05D000122 1.7e-08 62.4 48 60.4
Nn8g39573 Nelumbo nucifera HOM05D000191 ORTHO05D000122 2.2e-08 62.0 49 61.2
QL02p090077 Quercus lobata HOM05D000191 ORTHO05D000122 2.2e-08 62.0 48 64.6
Sabra18G0106300 Salix brachista HOM05D000191 ORTHO05D000122 2.2e-08 62.0 46 65.2
CsaV3_1G027900 Cucumis sativus L. HOM05D000191 ORTHO05D000122 2.9e-08 61.6 46 65.2
FvH4_1g02511 Fragaria vesca HOM05D000191 ORTHO05D000122 2.9e-08 61.6 48 58.3
Prupe.6G359600 Prunus persica HOM05D000191 ORTHO05D000122 2.9e-08 61.6 44 68.2
VMungo1215G2586 Vigna mungo HOM05D000191 ORTHO05D000122 2.9e-08 61.6 48 60.4
Haze_25488 Corylus avellana HOM05D000191 ORTHO05D000122 3.8e-08 61.2 49 67.3
PSO170G1284 Papaver somniferum HOM05D000191 ORTHO05D000122 3.8e-08 61.2 48 60.4
TWI32G1223 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 3.8e-08 61.2 48 62.5
Thhalv10015371m.g Eutrema salsugineum HOM05D000191 ORTHO05D000122 5.0e-08 60.8 45 62.2
PSO170G4912 Papaver somniferum HOM05D000191 ORTHO05D000122 5.0e-08 60.8 48 60.4
PSO210G5977 Papaver somniferum HOM05D000191 ORTHO05D000122 5.0e-08 60.8 48 64.6
Gohir.D06G052300 Gossypium hirsutum HOM05D000191 ORTHO05D000122 6.5e-08 60.5 48 60.4
Potri.018G124945 Populus trichocarpa HOM05D000191 ORTHO05D000122 6.5e-08 60.5 46 63.0
Potri.T124607 Populus trichocarpa HOM05D000191 ORTHO05D000122 6.5e-08 60.5 46 63.0
CANSAT56G0119 Cannabis sativa HOM05D000191 ORTHO05D000122 8.5e-08 60.1 44 63.6
FvH4_1g02520 Fragaria vesca HOM05D000191 ORTHO05D000122 8.5e-08 60.1 47 61.7
MD15G1165300 Malus domestica HOM05D000191 ORTHO05D000122 8.5e-08 60.1 48 58.3
RcHm_v2.0_Chr2g0087551 Rosa chinensis HOM05D000191 ORTHO05D000122 8.5e-08 60.1 47 61.7
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 1.1e-07 59.7 48 62.5
C03p11530 Brassica napus HOM05D000191 ORTHO05D000122 1.1e-07 59.7 45 60.0
BolC3t13625H Brassica oleracea HOM05D000191 ORTHO05D000122 1.1e-07 59.7 45 60.0
CiPaw.07G078600 Carya illinoinensis HOM05D000191 ORTHO05D000122 1.1e-07 59.7 46 65.2
MELO3C010302.2 Cucumis melo HOM05D000191 ORTHO05D000122 1.1e-07 59.7 46 65.2
MD15G1165200 Malus domestica HOM05D000191 ORTHO05D000122 1.1e-07 59.7 47 57.4
Potri.018G025200 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.1e-07 59.7 47 59.6
RcHm_v2.0_Chr3g0448141 Rosa chinensis HOM05D000191 ORTHO05D000122 1.1e-07 59.7 45 64.4
Sabra18G0027800 Salix brachista HOM05D000191 ORTHO05D000122 1.1e-07 59.7 47 59.6
BcaB01g04795 Brassica carinata HOM05D000191 ORTHO05D000122 1.5e-07 59.3 44 63.6
CSS0046224 Camellia sinensis var. sinensis HOM05D000191 ORTHO05D000122 1.5e-07 59.3 49 59.2
CANSAT11G0736 Cannabis sativa HOM05D000191 ORTHO05D000122 1.5e-07 59.3 48 56.2
Cfa006276 Carpinus fangiana HOM05D000191 ORTHO05D000122 1.5e-07 59.3 46 65.2
COL.COLO4_15569 Corchorus olitorius HOM05D000191 ORTHO05D000122 1.5e-07 59.3 48 56.2
MD15G1127800 Malus domestica HOM05D000191 ORTHO05D013416 1.5e-07 59.3 45 64.4
RcHm_v2.0_Chr3g0448161 Rosa chinensis HOM05D000191 ORTHO05D000122 1.5e-07 59.3 46 60.9
vmacro07730 Vaccinium macrocarpon HOM05D000191 ORTHO05D000122 1.5e-07 59.3 47 59.6
MD08G1156800 Malus domestica HOM05D000191 ORTHO05D000122 1.9e-07 58.9 46 65.2
Manes.06G046200 Manihot esculenta HOM05D000191 ORTHO05D000122 1.9e-07 58.9 49 55.1
Aa31LG1G14370 Aethionema arabicum HOM05D000191 ORTHO05D000122 2.5e-07 58.5 46 58.7
CANSAT21G2031 Cannabis sativa HOM05D000191 ORTHO05D000122 2.5e-07 58.5 46 60.9
Gorai.013G235500 Gossypium raimondii HOM05D000191 ORTHO05D000122 3.2e-07 58.2 46 56.5
BraA10t44043Z Brassica rapa HOM05D000191 ORTHO05D000122 4.2e-07 57.8 45 57.8
CANSAT11G1985 Cannabis sativa HOM05D000191 ORTHO05D000122 4.2e-07 57.8 47 57.4
Lalb_Chr13g0301471 Lupinus albus HOM05D000191 ORTHO05D013416 4.2e-07 57.8 51 52.9
QL05p069990 Quercus lobata HOM05D000191 ORTHO05D000122 4.2e-07 57.8 46 56.5
TWI63G0431 Tripterygium wilfordii HOM05D000191 ORTHO05D013416 4.2e-07 57.8 51 52.9
BcaC04g19416 Brassica carinata HOM05D000191 ORTHO05D000122 5.5e-07 57.4 44 59.1
A03p09960 Brassica napus HOM05D000191 ORTHO05D000122 5.5e-07 57.4 45 57.8
A10p19680 Brassica napus HOM05D000191 ORTHO05D000122 5.5e-07 57.4 44 59.1
C09p55940 Brassica napus HOM05D000191 ORTHO05D000122 5.5e-07 57.4 44 59.1
BolC9t58463H Brassica oleracea HOM05D000191 ORTHO05D000122 5.5e-07 57.4 44 59.1
BraA03t10308Z Brassica rapa HOM05D000191 ORTHO05D000122 5.5e-07 57.4 45 57.8
CANSAT11G2614 Cannabis sativa HOM05D000191 ORTHO05D000122 5.5e-07 57.4 47 55.3
CANSAT54G1602 Cannabis sativa HOM05D000191 ORTHO05D000122 5.5e-07 57.4 48 56.2
Ciclev10010549m.g Citrus clementina HOM05D000191 ORTHO05D000122 5.5e-07 57.4 44 56.8
Migut.A00025 Erythranthe guttata HOM05D000191 ORTHO05D000122 5.5e-07 57.4 49 59.2
Gohir.D08G100200 Gossypium hirsutum HOM05D000191 ORTHO05D000122 5.5e-07 57.4 46 56.5
MD02G1022600 Malus domestica HOM05D000191 ORTHO05D000122 5.5e-07 57.4 48 56.2
PSO675G3959 Papaver somniferum HOM05D000191 ORTHO05D000122 5.5e-07 57.4 48 56.2
Solyc12g019040.3 Solanum lycopersicum HOM05D000191 ORTHO05D013416 5.5e-07 57.4 52 57.7
Thecc.09G022100 Theobroma cacao HOM05D000191 ORTHO05D000122 5.5e-07 57.4 46 60.9
BcaB01g04796 Brassica carinata HOM05D000191 ORTHO05D000122 7.2e-07 57.0 44 61.4
CARHR192570 Cardamine hirsuta HOM05D000191 ORTHO05D000122 7.2e-07 57.0 44 59.1
CiPaw.07G078700 Carya illinoinensis HOM05D000191 ORTHO05D000122 7.2e-07 57.0 46 58.7
DCAR_003100 Daucus carota HOM05D000191 ORTHO05D000122 7.2e-07 57.0 49 55.1
FvH4_2g28830 Fragaria vesca HOM05D000191 ORTHO05D000122 7.2e-07 57.0 46 63.0
FAN20G2115 Fragaria x ananassa HOM05D000191 ORTHO05D000122 7.2e-07 57.0 46 63.0
FAN24G1710 Fragaria x ananassa HOM05D000191 ORTHO05D000122 7.2e-07 57.0 46 63.0
PSO210G0345 Papaver somniferum HOM05D000191 ORTHO05D000122 7.2e-07 57.0 47 59.6
Sed0002084 Sechium edule HOM05D000191 ORTHO05D000122 7.2e-07 57.0 46 63.0
GSVIVG01035881001 Vitis vinifera HOM05D000191 ORTHO05D000122 7.2e-07 57.0 46 60.9
Atru.chr7.1959 Acer truncatum HOM05D000191 ORTHO05D000122 9.4e-07 56.6 45 57.8
FvH4_6g00700 Fragaria vesca HOM05D000191 ORTHO05D000122 9.4e-07 56.6 46 56.5
Glyma.17G110300 Glycine max HOM05D000191 ORTHO05D000122 9.4e-07 56.6 48 54.2
Solyc12g009670.1 Solanum lycopersicum HOM05D000191 ORTHO05D013416 9.4e-07 56.6 51 54.9
VMungo1215G1484 Vigna mungo HOM05D000191 ORTHO05D000122 9.4e-07 56.6 47 53.2
Cfa006275 Carpinus fangiana HOM05D000191 ORTHO05D000122 1.2e-06 56.2 46 60.9
Gorai.004G108000 Gossypium raimondii HOM05D000191 ORTHO05D000122 1.2e-06 56.2 46 54.3
Lalb_Chr13g0301521 Lupinus albus HOM05D000191 ORTHO05D013416 1.2e-06 56.2 50 56.0
PSO170G0629 Papaver somniferum HOM05D000191 ORTHO05D000122 1.2e-06 56.2 47 59.6
RcHm_v2.0_Chr6g0297581 Rosa chinensis HOM05D000191 ORTHO05D000122 1.2e-06 56.2 46 60.9
TPR.G7624 Trifolium pratense HOM05D000191 ORTHO05D000122 1.2e-06 56.2 48 52.1
Atru.chr7.1958 Acer truncatum HOM05D000191 ORTHO05D000122 1.6e-06 55.8 49 61.2
ClCG06G011600 Citrullus lanatus HOM05D000191 ORTHO05D000122 1.6e-06 55.8 46 60.9
Ciclev10010441m.g Citrus clementina HOM05D000191 ORTHO05D000122 1.6e-06 55.8 48 56.2
CsaV3_2G003200 Cucumis sativus L. HOM05D000191 ORTHO05D000122 1.6e-06 55.8 48 56.2
Duzib168G2363 Durio zibethinus HOM05D000191 ORTHO05D000122 1.6e-06 55.8 48 56.2
FAN02G1236 Fragaria x ananassa HOM05D000191 ORTHO05D000122 1.6e-06 55.8 47 55.3
Manes.14G116800 Manihot esculenta HOM05D000191 ORTHO05D000122 1.6e-06 55.8 49 55.1
Potri.018G124832 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.6e-06 55.8 48 54.2
Potri.T124507 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.6e-06 55.8 48 54.2
QL03p008287 Quercus lobata HOM05D000191 ORTHO05D000122 1.6e-06 55.8 46 56.5
Sp6g24150 Schrenkiella parvula HOM05D000191 ORTHO05D000122 1.6e-06 55.8 45 55.6
Cfa002298 Carpinus fangiana HOM05D000191 ORTHO05D000122 2.1e-06 55.5 49 61.2
Gorai.009G059300 Gossypium raimondii HOM05D000191 ORTHO05D000122 2.1e-06 55.5 47 55.3
Lj4g0017518 Lotus japonicus HOM05D000191 ORTHO05D000122 2.1e-06 55.5 51 54.9
MBI18_g27686_MAGBIO Magnolia biondii HOM05D000191 ORTHO05D000122 2.1e-06 55.5 47 55.3
Thecc.09G133900 Theobroma cacao HOM05D000191 ORTHO05D000122 2.1e-06 55.5 49 57.1
CANSAT11G2602 Cannabis sativa HOM05D000191 ORTHO05D000122 2.7e-06 55.1 47 55.3
Cpa.g.sc46.53 Carica papaya HOM05D000191 ORTHO05D000122 2.7e-06 55.1 46 54.3
Nitab4.5_0004736g0010 Nicotiana tabacum HOM05D000191 ORTHO05D000122 2.7e-06 55.1 49 57.1
Phvul.003G169900 Phaseolus vulgaris HOM05D000191 ORTHO05D000122 2.7e-06 55.1 49 53.1
Psat4g036360 Pisum sativum HOM05D000191 ORTHO05D000122 2.7e-06 55.1 48 52.1
Thecc.09G134000 Theobroma cacao HOM05D000191 ORTHO05D000122 2.7e-06 55.1 48 54.2
Lalb_Chr13g0301511 Lupinus albus HOM05D000191 ORTHO05D000122 3.6e-06 54.7 48 52.1
Aa31LG7G11460 Aethionema arabicum HOM05D000191 ORTHO05D000122 4.7e-06 54.3 46 54.3
arahy.Tifrunner.gnm1.ann1.KMDC3J Arachis hypogaea HOM05D000191 ORTHO05D000122 4.7e-06 54.3 48 56.2
Glyma.13G161200 Glycine max HOM05D000191 ORTHO05D000122 4.7e-06 54.3 48 52.1
PSO663G0001 Papaver somniferum HOM05D000191 ORTHO05D000122 4.7e-06 54.3 48 60.4
PSO782G4518 Papaver somniferum HOM05D000191 ORTHO05D000122 4.7e-06 54.3 45 60.0
Potri.006G064600 Populus trichocarpa HOM05D000191 ORTHO05D000122 4.7e-06 54.3 48 56.2
SGA_v2.0_scaffold163G37965 Striga asiatica HOM05D000191 ORTHO05D000122 4.7e-06 54.3 52 53.8
THA.LOC104799637 Tarenaya hassleriana HOM05D000191 ORTHO05D000122 4.7e-06 54.3 48 52.1
THA.LOC104808962 Tarenaya hassleriana HOM05D000191 ORTHO05D000122 4.7e-06 54.3 46 56.5
Carub.0006s1865 Capsella rubella HOM05D000191 ORTHO05D000122 6.1e-06 53.9 47 57.4
Gohir.D05G058200 Gossypium hirsutum HOM05D000191 ORTHO05D000122 6.1e-06 53.9 47 53.2
Sed0014941 Sechium edule HOM05D000191 ORTHO05D000122 6.1e-06 53.9 47 53.2
TPR.G7623 Trifolium pratense HOM05D000191 ORTHO05D000122 6.1e-06 53.9 51 51.0
Glyma.17G110500 Glycine max HOM05D000191 ORTHO05D000122 8.0e-06 53.5 48 54.2
Manes.06G046100 Manihot esculenta HOM05D000191 ORTHO05D000122 8.0e-06 53.5 50 58.0
PSO449G0001 Papaver somniferum HOM05D000191 ORTHO05D013416 8.0e-06 53.5 46 58.7
HPP92_018738 Vanilla planifolia HOM05D000191 ORTHO05D000122 8.0e-06 53.5 47 53.2


User provided reference genes

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