Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 9.1e-107 390.2 190 100.0
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 4.9e-92 341.3 175 93.1
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 1.7e-89 332.8 175 92.0
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.9e-89 332.0 175 91.4
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 9.5e-88 327.0 172 89.5
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 9.5e-88 327.0 175 88.0
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.2e-87 326.6 172 88.4
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.2e-87 326.6 175 88.6
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.1e-87 325.9 172 89.0
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 3.6e-87 325.1 172 89.0
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 3.6e-87 325.1 172 89.5
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 6.1e-87 324.3 172 88.4
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 6.1e-87 324.3 172 88.4
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 6.1e-87 324.3 171 89.5
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 8.0e-87 323.9 172 88.4
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.4e-86 323.2 186 81.7
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.4e-86 323.2 175 86.9
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.4e-86 323.2 172 89.5
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 1.8e-86 322.8 172 87.8
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 2.3e-86 322.4 175 86.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 3.1e-86 322.0 172 88.4
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 3.1e-86 322.0 172 89.0
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 3.1e-86 322.0 172 89.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 4.0e-86 321.6 172 89.0
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 4.0e-86 321.6 172 87.8
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 5.2e-86 321.2 175 85.1
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 5.2e-86 321.2 175 85.7
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 5.2e-86 321.2 172 88.4
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 6.8e-86 320.9 175 85.1
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 6.8e-86 320.9 172 88.4
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 8.9e-86 320.5 180 83.3
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 8.9e-86 320.5 172 87.2
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 1.2e-85 320.1 175 85.1
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.2e-85 320.1 175 85.1
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.2e-85 320.1 174 86.8
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.2e-85 320.1 175 86.3
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.5e-85 319.7 172 87.8
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 2.0e-85 319.3 172 87.8
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.0e-85 319.3 172 87.8
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.6e-85 318.9 172 87.8
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 2.6e-85 318.9 174 85.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 3.4e-85 318.5 172 87.2
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.4e-85 318.5 172 87.2
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 4.4e-85 318.2 172 86.6
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 5.8e-85 317.8 175 84.6
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 5.8e-85 317.8 175 84.6
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 5.8e-85 317.8 174 85.1
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.8e-85 317.8 172 86.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 7.5e-85 317.4 173 86.7
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 7.5e-85 317.4 171 86.0
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 9.8e-85 317.0 172 86.6
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 9.8e-85 317.0 172 86.6
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.3e-84 316.6 172 87.2
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 2.2e-84 315.8 174 84.5
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 2.2e-84 315.8 174 84.5
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 2.2e-84 315.8 172 86.6
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 3.7e-84 315.1 174 84.5
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 3.7e-84 315.1 175 85.7
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.7e-84 315.1 172 85.5
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 4.9e-84 314.7 172 87.2
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 4.9e-84 314.7 172 87.2
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 4.9e-84 314.7 172 84.9
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 6.4e-84 314.3 172 87.2
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.4e-84 314.3 171 87.1
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 6.4e-84 314.3 171 86.5
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 6.4e-84 314.3 172 85.5
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.1e-83 313.5 175 82.3
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.4e-83 313.2 172 85.5
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 2.4e-83 312.4 172 84.3
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.2e-83 312.0 171 86.0
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 4.1e-83 311.6 173 84.4
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 7.0e-83 310.8 172 84.9
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 7.0e-83 310.8 187 79.7
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 9.2e-83 310.5 172 85.5
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.6e-82 309.7 171 86.5
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 3.5e-82 308.5 172 84.9
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.5e-82 308.5 172 84.9
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.6e-82 308.1 172 84.9
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 6.0e-82 307.8 173 84.4
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.0e-81 307.0 172 86.0
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.7e-81 306.2 172 84.9
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.7e-81 306.2 172 83.7
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 5.0e-81 304.7 172 83.7
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 1.1e-80 303.5 172 83.7
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 3.3e-80 302.0 171 82.5
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 7.3e-80 300.8 175 81.7
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 7.3e-80 300.8 174 82.2
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 7.3e-80 300.8 174 82.2
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 7.3e-80 300.8 174 82.2
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 7.3e-80 300.8 174 82.2
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 9.5e-80 300.4 226 67.7
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 6.2e-79 297.7 174 81.6
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-78 296.6 174 79.3
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.8e-78 296.2 159 88.1
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.1e-78 295.4 174 78.7
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 8.9e-78 293.9 178 79.8
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 8.9e-78 293.9 169 81.1
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.4e-77 291.6 176 78.4
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.1e-75 287.0 158 87.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.8e-69 264.6 151 84.1
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.3e-68 263.5 155 82.6
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.9e-68 262.3 146 84.2
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 9.2e-67 257.3 174 69.5
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.1e-66 256.1 172 66.9
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 3.5e-66 255.4 172 69.2
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.1e-64 250.4 172 66.3
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.5e-64 249.2 130 91.5
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.5e-64 249.2 130 91.5
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 4.3e-64 248.4 135 88.1
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.6e-63 246.5 136 86.8
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 2.0e-61 239.6 127 88.2
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 4.4e-61 238.4 129 87.6
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 8.4e-60 234.2 145 77.9
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.4e-59 233.4 127 87.4
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.4e-59 233.4 134 84.3
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.9e-59 233.0 132 81.8
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 2.1e-58 229.6 130 83.1
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 4.6e-58 228.4 127 83.5
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 4.6e-58 228.4 173 67.1
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 6.0e-58 228.0 177 62.1
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.0e-57 227.3 135 82.2
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.6e-53 212.6 127 79.5
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 2.6e-53 212.6 147 74.8
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-52 209.5 163 66.3
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 7.9e-50 201.1 132 73.5
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 8.7e-49 197.6 131 74.0
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.2e-45 187.2 126 70.6
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.3e-44 183.7 131 71.8
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.6e-37 159.5 93 80.6
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-35 153.7 90 82.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 4.2e-35 152.1 93 78.5
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-34 150.6 88 84.1
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.2e-34 150.6 93 75.3
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 6.0e-34 148.3 80 82.5
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.7e-33 144.4 95 76.8
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-32 142.9 101 73.3
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-32 142.9 89 79.8
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.3e-32 142.5 103 69.9
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-31 140.6 93 74.2
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 4.5e-29 132.1 99 63.6
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 1.3e-28 130.6 75 84.0
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.0e-28 128.6 80 75.0
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 3.5e-26 122.5 192 36.5
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.0e-25 120.9 69 75.4
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.9e-25 119.0 70 81.4
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 4.5e-21 105.5 89 60.7
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 3.2e-19 99.4 57 78.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 1.7e-12 77.0 39 79.5


User provided reference genes

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