Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 2.8e-134 481.9 233 100.0
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.2e-108 396.7 227 86.3
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.9e-106 389.4 227 84.1
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 3.0e-104 382.1 228 79.4
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 6.8e-96 354.4 228 74.1
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 4.9e-94 348.2 223 71.7
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 2.4e-93 345.9 227 72.7
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 3.2e-93 345.5 228 71.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 2.7e-92 342.4 223 70.9
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 2.7e-92 342.4 228 69.7
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 6.0e-92 341.3 224 69.2
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.0e-92 341.3 224 69.2
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 7.8e-92 340.9 228 70.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.0e-91 340.5 228 71.1
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.7e-91 339.7 229 73.4
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.7e-91 339.7 222 73.4
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 3.0e-91 339.0 230 70.0
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.1e-90 337.0 228 70.2
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.5e-90 336.7 229 69.0
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.9e-90 336.3 228 71.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.3e-90 335.5 227 67.4
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 4.3e-90 335.1 224 68.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 5.6e-90 334.7 228 71.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 5.6e-90 334.7 209 74.2
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 7.3e-90 334.3 221 70.6
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 9.5e-90 334.0 228 70.6
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 9.5e-90 334.0 231 69.3
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 9.5e-90 334.0 223 69.1
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.2e-89 333.6 223 70.0
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.1e-89 332.8 228 69.3
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.1e-89 332.8 228 69.3
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 4.7e-89 331.6 223 68.6
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.7e-89 331.6 228 69.3
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 4.7e-89 331.6 232 66.8
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 6.2e-89 331.3 206 73.8
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 8.1e-89 330.9 209 72.2
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-88 330.5 210 74.3
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.1e-88 330.5 227 71.8
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.4e-88 330.1 224 70.1
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.4e-88 330.1 223 67.3
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 3.1e-88 328.9 224 69.2
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 3.1e-88 328.9 224 69.2
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.1e-88 328.9 224 68.8
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.1e-88 328.9 209 73.7
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 4.0e-88 328.6 228 67.5
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 8.9e-88 327.4 229 70.7
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.2e-87 327.0 232 65.9
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.0e-87 326.2 222 70.7
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.0e-87 326.2 221 68.8
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.4e-87 325.1 228 69.3
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 5.8e-87 324.7 227 66.5
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 7.5e-87 324.3 229 69.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 9.8e-87 323.9 223 66.4
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 9.8e-87 323.9 223 67.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.3e-86 323.6 228 67.1
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.7e-86 323.2 228 67.1
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.7e-86 323.2 222 67.6
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.7e-86 323.2 227 66.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.7e-86 323.2 222 67.1
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.2e-86 322.8 207 73.4
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.2e-86 322.8 229 66.8
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 3.7e-86 322.0 227 66.1
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 3.7e-86 322.0 226 67.3
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 8.3e-86 320.9 222 66.7
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 1.1e-85 320.5 227 66.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.1e-85 320.5 224 68.8
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.4e-85 320.1 226 67.7
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.9e-85 319.7 227 65.6
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 2.4e-85 319.3 229 64.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.1e-85 318.5 228 65.8
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.1e-85 318.5 228 65.8
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.4e-85 318.2 217 69.1
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 7.1e-85 317.8 227 65.6
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.1e-84 316.2 207 69.6
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.7e-84 315.8 224 66.5
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 6.0e-84 314.7 231 64.1
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 6.0e-84 314.7 224 66.1
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 3.0e-83 312.4 228 65.4
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 3.9e-83 312.0 228 68.4
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.9e-82 309.7 226 65.5
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 4.3e-82 308.5 229 66.8
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.2e-81 307.0 238 64.7
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.1e-81 306.2 213 69.5
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 1.5e-79 300.1 222 64.9
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.5e-79 300.1 198 70.7
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.5e-79 300.1 221 61.5
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.3e-75 287.0 225 55.6
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.7e-75 286.6 227 58.1
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 5.1e-75 285.0 181 75.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 5.6e-74 281.6 227 57.7
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.2e-73 280.4 201 66.7
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 4.7e-73 278.5 201 66.2
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 5.2e-72 275.0 223 60.5
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 8.9e-72 274.2 194 67.0
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.6e-71 272.7 207 62.8
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.2e-70 269.6 230 56.5
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 3.0e-67 259.2 224 57.6
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 3.9e-67 258.8 223 57.0
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 6.6e-67 258.1 223 57.0
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 6.6e-67 258.1 223 57.0
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 6.6e-67 258.1 223 57.0
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 6.6e-67 258.1 223 57.8
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 2.5e-66 256.1 210 59.0
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.3e-65 253.8 213 58.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.3e-65 253.8 213 58.7
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-65 253.1 223 56.1
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 2.1e-65 253.1 223 56.1
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.1e-65 253.1 225 57.8
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.1e-65 253.1 210 58.6
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.8e-65 252.7 210 59.0
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 6.2e-65 251.5 256 53.1
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 4.5e-63 245.4 215 56.3
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-61 240.7 146 72.6
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.4e-61 240.4 182 64.3
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.6e-60 235.3 225 49.8
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.5e-58 229.6 147 69.4
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.4e-58 228.0 222 51.8
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.6e-57 226.9 226 50.4
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.9e-54 216.1 238 48.3
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 4.6e-52 208.8 165 61.8
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 3.8e-46 189.1 196 55.6
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.6e-44 183.7 235 44.7
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 6.0e-44 181.8 232 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.9e-42 176.8 206 44.7
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.9e-38 162.9 121 64.5
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.5e-34 149.8 217 39.2
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.1e-29 134.4 97 70.1
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.0e-27 126.3 218 34.4
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.2e-21 106.3 158 39.2
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.4e-19 100.9 170 34.7
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 3.0e-19 99.8 86 51.2
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 5.3e-16 89.0 47 89.4
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 1.7e-14 84.0 74 51.4
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 6.5e-14 82.0 62 61.3
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.3e-09 67.8 43 65.1


User provided reference genes

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