Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g223890 Amaranthus hybridus HOM05D001030 ORTHO05D060855 1.5e-95 352.8 178 100.0
Ah.01g019640 Amaranthus hybridus HOM05D001030 ORTHO05D003090 1.4e-08 63.9 43 62.8
EL10Ac9g21761 Beta vulgaris HOM05D001030 ORTHO05D003090 1.8e-08 63.5 40 67.5
AUR62011359 Chenopodium quinoa HOM05D001030 ORTHO05D003090 2.4e-08 63.2 40 70.0
AUR62016702 Chenopodium quinoa HOM05D001030 ORTHO05D003090 2.4e-08 63.2 40 70.0
Hund29069 Selenicereus undatus HOM05D001030 ORTHO05D003090 4.1e-08 62.4 40 70.0
Hund29072 Selenicereus undatus HOM05D001030 ORTHO05D003090 4.1e-08 62.4 40 70.0
CAN.G322.109 Capsicum annuum HOM05D001030 ORTHO05D003090 7.0e-08 61.6 39 66.7
RcHm_v2.0_Chr6g0262951 Rosa chinensis HOM05D001030 ORTHO05D003090 7.0e-08 61.6 69 42.0
Potri.009G112307 Populus trichocarpa HOM05D001030 ORTHO05D003090 9.1e-08 61.2 39 64.1
Potri.T125204 Populus trichocarpa HOM05D001030 ORTHO05D003090 9.1e-08 61.2 39 64.1
PGSC0003DMG401025167 Solanum tuberosum HOM05D001030 ORTHO05D003090 9.1e-08 61.2 43 62.8
Sabra09G0085700 Salix brachista HOM05D001030 ORTHO05D003090 1.2e-07 60.8 39 64.1
Aqoxy6G01009 Aquilegia oxysepala HOM05D001030 ORTHO05D003090 2.0e-07 60.1 40 62.5
Oeu014324.1 Olea europaea HOM05D001030 ORTHO05D003090 2.0e-07 60.1 39 64.1
Sc18g0004700 Simmondsia chinensis HOM05D001030 ORTHO05D003090 2.0e-07 60.1 40 62.5
Os05g0502200 Oryza sativa ssp. japonica HOM05D001030 ORTHO05D003090 2.6e-07 59.7 40 62.5
CANSAT25G1023 Cannabis sativa HOM05D001030 ORTHO05D003090 3.5e-07 59.3 51 52.9
Glyma.11G120600 Glycine max HOM05D001030 ORTHO05D003090 3.5e-07 59.3 40 62.5
Manes.15G148200 Manihot esculenta HOM05D001030 ORTHO05D003090 3.5e-07 59.3 39 61.5
Ca_20847_v3 Cicer arietinum L. HOM05D001030 ORTHO05D003090 4.5e-07 58.9 39 66.7
Medtr4g069140 Medicago truncatula HOM05D001030 ORTHO05D003090 4.5e-07 58.9 39 66.7
Phvul.011G047600 Phaseolus vulgaris HOM05D001030 ORTHO05D003090 4.5e-07 58.9 39 64.1
VMungo1127G1731 Vigna mungo HOM05D001030 ORTHO05D003090 4.5e-07 58.9 39 64.1
arahy.Tifrunner.gnm1.ann1.3ZSL29 Arachis hypogaea HOM05D001030 ORTHO05D003090 5.9e-07 58.5 39 64.1
Duzib132G0716 Durio zibethinus HOM05D001030 ORTHO05D003090 5.9e-07 58.5 40 60.0
FAN27G3413 Fragaria x ananassa HOM05D001030 ORTHO05D003090 5.9e-07 58.5 85 43.5
Nitab4.5_0004287g0080 Nicotiana tabacum HOM05D001030 ORTHO05D003090 5.9e-07 58.5 43 60.5
Sopen01g051560 Solanum pennellii HOM05D001030 ORTHO05D003090 5.9e-07 58.5 39 64.1
HanXRQChr10g0307111 Helianthus annuus HOM05D001030 ORTHO05D003090 7.7e-07 58.2 43 58.1
Os01g0782500 Oryza sativa ssp. japonica HOM05D001030 ORTHO05D003090 7.7e-07 58.2 40 60.0
Peaxi162Scf00016g01030 Petunia axillaris HOM05D001030 ORTHO05D003090 7.7e-07 58.2 39 66.7
CiPaw.05G061000 Carya illinoinensis HOM05D001030 ORTHO05D003090 1.0e-06 57.8 43 58.1
Solyc01g109370.3 Solanum lycopersicum HOM05D001030 ORTHO05D003090 1.0e-06 57.8 39 64.1
Thecc.02G122000 Theobroma cacao HOM05D001030 ORTHO05D003090 1.0e-06 57.8 40 60.0
TPR.G28049 Trifolium pratense HOM05D001030 ORTHO05D003090 1.0e-06 57.8 38 65.8
arahy.Tifrunner.gnm1.ann1.3XBT3V Arachis hypogaea HOM05D001030 ORTHO05D003090 1.3e-06 57.4 39 64.1
DCAR_022098 Daucus carota HOM05D001030 ORTHO05D003090 1.3e-06 57.4 40 62.5
FvH4_2g08140 Fragaria vesca HOM05D001030 ORTHO05D003090 1.3e-06 57.4 85 43.5
Lsat_1_v5_gn_5_118280 Lactuca sativa HOM05D001030 ORTHO05D003090 1.3e-06 57.4 43 58.1
Lj5C200G17 Lonicera japonica HOM05D001030 ORTHO05D003090 1.3e-06 57.4 40 60.0
MSTRG.5389 Avicennia marina HOM05D001030 ORTHO05D003090 1.7e-06 57.0 39 61.5
Glyma.12G045700 Glycine max HOM05D001030 ORTHO05D003090 2.2e-06 56.6 40 60.0
Peaxi162Scf00684g00575 Petunia axillaris HOM05D001030 ORTHO05D003090 2.2e-06 56.6 39 64.1
SalBow6G6676 Salvia bowleyana HOM05D001030 ORTHO05D003090 2.2e-06 56.6 40 60.0
CSS0001423 Camellia sinensis var. sinensis HOM05D001030 ORTHO05D003090 2.9e-06 56.2 40 57.5
ECA234G1211 Erigeron canadensis HOM05D001030 ORTHO05D003090 2.9e-06 56.2 43 58.1
FAN15G0893 Fragaria x ananassa HOM05D001030 ORTHO05D003090 2.9e-06 56.2 85 42.4
FAN20G0111 Fragaria x ananassa HOM05D001030 ORTHO05D003090 2.9e-06 56.2 85 42.4
Cpa.g.sc62.110 Carica papaya HOM05D001030 ORTHO05D003090 3.8e-06 55.8 39 61.5
Ciclev10028764m.g Citrus clementina HOM05D001030 ORTHO05D003090 3.8e-06 55.8 39 61.5
PSO541G3837 Papaver somniferum HOM05D001030 ORTHO05D003090 3.8e-06 55.8 40 60.0
Psat7g185040 Pisum sativum HOM05D001030 ORTHO05D003090 3.8e-06 55.8 39 64.1
Sed0015205 Sechium edule HOM05D001030 ORTHO05D003090 3.8e-06 55.8 39 61.5
TWI75G1722 Tripterygium wilfordii HOM05D001030 ORTHO05D003090 3.8e-06 55.8 39 64.1
HPP92_016840 Vanilla planifolia HOM05D001030 ORTHO05D003090 3.8e-06 55.8 39 59.0
GSVIVG01031915001 Vitis vinifera HOM05D001030 ORTHO05D003090 3.8e-06 55.8 60 45.0
Zm00001eb151440 Zea mays HOM05D001030 ORTHO05D003090 3.8e-06 55.8 40 57.5
Cfa004976 Carpinus fangiana HOM05D001030 ORTHO05D003090 5.0e-06 55.5 39 61.5
Hma1.2p1_0066F.1_g036740 Hydrangea macrophylla HOM05D001030 ORTHO05D003090 5.0e-06 55.5 43 55.8
Migut.B00266 Erythranthe guttata HOM05D001030 ORTHO05D003090 6.5e-06 55.1 40 57.5
Nitab4.5_0004280g0060 Nicotiana tabacum HOM05D001030 ORTHO05D003090 6.5e-06 55.1 39 64.1
QL11p042344 Quercus lobata HOM05D001030 ORTHO05D003090 6.5e-06 55.1 39 61.5
TWI79G0970 Tripterygium wilfordii HOM05D001030 ORTHO05D003090 6.5e-06 55.1 39 61.5
Actinidia17828 Actinidia chinensis HOM05D001030 ORTHO05D003090 8.5e-06 54.7 39 59.0
Dinv23555 Davidia involucrata HOM05D001030 ORTHO05D003090 8.5e-06 54.7 43 55.8
Lj3g0020577 Lotus japonicus HOM05D001030 ORTHO05D003090 8.5e-06 54.7 39 59.0
Prupe.8G103400 Prunus persica HOM05D001030 ORTHO05D003090 8.5e-06 54.7 39 59.0


User provided reference genes

Program Settings