Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g222780 Amaranthus hybridus HOM05D001813 ORTHO05D008124 1.4e-44 182.6 92 100.0
EL10Ac7g16223 Beta vulgaris HOM05D001813 ORTHO05D008124 3.6e-32 141.4 92 80.4
AUR62020171 Chenopodium quinoa HOM05D001813 ORTHO05D008124 3.0e-31 138.3 92 78.3
AUR62001609 Chenopodium quinoa HOM05D001813 ORTHO05D008124 6.7e-31 137.1 92 78.3
Hund18828 Selenicereus undatus HOM05D001813 ORTHO05D008124 1.3e-26 122.9 92 69.6
Sc06g0006200 Simmondsia chinensis HOM05D001813 ORTHO05D008124 5.2e-23 110.9 90 65.6
PGR119G1182 Punica granatum HOM05D001813 ORTHO05D008124 2.0e-22 109.0 92 58.7
Potri.004G196200 Populus trichocarpa HOM05D001813 ORTHO05D008124 2.6e-22 108.6 92 58.7
Gohir.A03G035300 Gossypium hirsutum HOM05D001813 ORTHO05D008124 4.4e-22 107.8 92 60.9
Sabra04G0133000 Salix brachista HOM05D001813 ORTHO05D008124 5.7e-22 107.5 92 57.6
GSVIVG01037466001 Vitis vinifera HOM05D001813 ORTHO05D008124 5.7e-22 107.5 90 62.2
Gohir.D03G132900 Gossypium hirsutum HOM05D001813 ORTHO05D008124 7.5e-22 107.1 92 59.8
Gorai.003G140000 Gossypium raimondii HOM05D001813 ORTHO05D008124 7.5e-22 107.1 92 59.8
MSTRG.17658 Avicennia marina HOM05D001813 ORTHO05D008124 9.8e-22 106.7 92 54.3
TWI31G1397 Tripterygium wilfordii HOM05D001813 ORTHO05D008124 2.2e-21 105.5 92 55.4
Dinv05236 Davidia involucrata HOM05D001813 ORTHO05D008124 3.7e-21 104.8 91 59.3
Haze_23659 Corylus avellana HOM05D001813 ORTHO05D008124 4.8e-21 104.4 92 58.7
Cc01_g07600 Coffea canephora HOM05D001813 ORTHO05D008124 8.3e-21 103.6 92 56.5
Atru.chr3.2923 Acer truncatum HOM05D001813 ORTHO05D008124 1.4e-20 102.8 92 55.4
CSS0030952 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.4e-20 102.8 91 56.0
Nn7g37283 Nelumbo nucifera HOM05D001813 ORTHO05D008124 1.4e-20 102.8 92 58.7
Sed0003336 Sechium edule HOM05D001813 ORTHO05D008124 1.8e-20 102.4 92 57.6
Sopen11g029670 Solanum pennellii HOM05D001813 ORTHO05D008124 1.8e-20 102.4 92 56.5
PGSC0003DMG400027401 Solanum tuberosum HOM05D001813 ORTHO05D008124 1.8e-20 102.4 92 56.5
Manes.04G055488 Manihot esculenta HOM05D001813 ORTHO05D008124 2.4e-20 102.1 89 58.4
CsaV3_1G042050 Cucumis sativus L. HOM05D001813 ORTHO05D008124 4.1e-20 101.3 92 55.4
RcHm_v2.0_Chr5g0049661 Rosa chinensis HOM05D001813 ORTHO05D008124 4.1e-20 101.3 91 57.1
Solyc11g072010.3 Solanum lycopersicum HOM05D001813 ORTHO05D008124 4.1e-20 101.3 92 56.5
TAR623G0200 Trochodendron aralioides HOM05D001813 ORTHO05D008124 4.1e-20 101.3 92 57.6
Thecc.09G336900 Theobroma cacao HOM05D001813 ORTHO05D008124 5.4e-20 100.9 92 56.5
Duzib168G1187 Durio zibethinus HOM05D001813 ORTHO05D008124 7.0e-20 100.5 92 57.6
CAN.G280.22 Capsicum annuum HOM05D001813 ORTHO05D008124 9.1e-20 100.1 92 56.5
CiPaw.13G120200 Carya illinoinensis HOM05D001813 ORTHO05D008124 9.1e-20 100.1 92 56.5
Migut.N02415 Erythranthe guttata HOM05D001813 ORTHO05D008124 9.1e-20 100.1 92 54.3
Carub.0006s1936 Capsella rubella HOM05D001813 ORTHO05D008124 1.2e-19 99.8 92 55.4
Ciclev10031821m.g Citrus clementina HOM05D001813 ORTHO05D008124 1.2e-19 99.8 90 57.8
FAN21G3701 Fragaria x ananassa HOM05D001813 ORTHO05D008124 1.6e-19 99.4 91 56.0
Thhalv10013841m.g Eutrema salsugineum HOM05D001813 ORTHO05D008124 2.0e-19 99.0 92 55.4
MD11G1179300 Malus domestica HOM05D001813 ORTHO05D008124 2.0e-19 99.0 91 57.1
AT5G21060 Arabidopsis thaliana HOM05D001813 ORTHO05D008124 2.7e-19 98.6 92 53.3
Rhsim13G0201100 Rhododendron simsii HOM05D001813 ORTHO05D008124 2.7e-19 98.6 92 56.5
Nitab4.5_0009952g0030 Nicotiana tabacum HOM05D001813 ORTHO05D008124 3.5e-19 98.2 92 52.2
SalBow3G4352 Salvia bowleyana HOM05D001813 ORTHO05D008124 3.5e-19 98.2 92 50.0
THA.LOC104810965 Tarenaya hassleriana HOM05D001813 ORTHO05D008124 3.5e-19 98.2 90 55.6
HPP92_018006 Vanilla planifolia HOM05D001813 ORTHO05D008124 4.5e-19 97.8 92 55.4
FAN25G0391 Fragaria x ananassa HOM05D001813 ORTHO05D008124 5.9e-19 97.4 91 56.0
Actinidia07014 Actinidia chinensis HOM05D001813 ORTHO05D008124 1.0e-18 96.7 92 54.3
FAN16G2170 Fragaria x ananassa HOM05D001813 ORTHO05D008124 1.0e-18 96.7 91 54.9
Eucgr.J00623 Eucalyptus grandis HOM05D001813 ORTHO05D008124 1.3e-18 96.3 93 57.0
Lj2A924G26 Lonicera japonica HOM05D001813 ORTHO05D008124 1.3e-18 96.3 92 54.3
Lj2C922G2 Lonicera japonica HOM05D001813 ORTHO05D008124 1.3e-18 96.3 92 54.3
A10p19010 Brassica napus HOM05D001813 ORTHO05D008124 2.2e-18 95.5 92 55.4
BraA10t43979Z Brassica rapa HOM05D001813 ORTHO05D008124 2.2e-18 95.5 92 55.4
Ciclev10033902m.g Citrus clementina HOM05D001813 ORTHO05D008124 2.9e-18 95.1 88 55.7
HanXRQChr03g0084001 Helianthus annuus HOM05D001813 ORTHO05D008124 2.9e-18 95.1 92 53.3
BcaB08g36482 Brassica carinata HOM05D001813 ORTHO05D008124 3.8e-18 94.7 91 54.9
FvH4_3g27120 Fragaria vesca HOM05D001813 ORTHO05D008124 3.8e-18 94.7 91 56.0
FAN11G0469 Fragaria x ananassa HOM05D001813 ORTHO05D008124 3.8e-18 94.7 91 56.0
QL01p020357 Quercus lobata HOM05D001813 ORTHO05D008124 3.8e-18 94.7 90 55.6
Lsat_1_v5_gn_6_79520 Lactuca sativa HOM05D001813 ORTHO05D008124 5.0e-18 94.4 92 52.2
Prupe.5G009800 Prunus persica HOM05D001813 ORTHO05D008124 5.0e-18 94.4 88 55.7
CARHR191810 Cardamine hirsuta HOM05D001813 ORTHO05D008124 8.5e-18 93.6 91 52.7
Ca_16236_v3 Cicer arietinum L. HOM05D001813 ORTHO05D008124 1.1e-17 93.2 92 53.3
BcaC04g19501 Brassica carinata HOM05D001813 ORTHO05D008124 1.5e-17 92.8 92 54.3
AL6G32610 Arabidopsis lyrata HOM05D001813 ORTHO05D008124 1.9e-17 92.4 91 51.6
Lj6g0025568 Lotus japonicus HOM05D001813 ORTHO05D008124 1.9e-17 92.4 92 54.3
C09p55020 Brassica napus HOM05D001813 ORTHO05D008124 2.5e-17 92.0 92 54.3
BolC9t58365H Brassica oleracea HOM05D001813 ORTHO05D008124 2.5e-17 92.0 92 54.3
Sp6g23480 Schrenkiella parvula HOM05D001813 ORTHO05D008124 2.5e-17 92.0 92 51.1
TPR.G19398 Trifolium pratense HOM05D001813 ORTHO05D008124 2.5e-17 92.0 92 53.3
Psat5g109280 Pisum sativum HOM05D001813 ORTHO05D008124 4.2e-17 91.3 92 52.2
SGA_v2.0_scaffold79G25520 Striga asiatica HOM05D001813 ORTHO05D008124 4.2e-17 91.3 92 52.2
ECA240G4767 Erigeron canadensis HOM05D001813 ORTHO05D008124 7.2e-17 90.5 92 53.3
Cpa.g.sc103.70 Carica papaya HOM05D001813 ORTHO05D008124 9.5e-17 90.1 92 52.2
Phvul.L003537 Phaseolus vulgaris HOM05D001813 ORTHO05D008124 9.5e-17 90.1 92 52.2
Zm00001eb405410 Zea mays HOM05D001813 ORTHO05D008124 1.6e-16 89.4 89 53.9
Aa31LG1G13710 Aethionema arabicum HOM05D001813 ORTHO05D008124 2.1e-16 89.0 92 51.1
Medtr3g079330 Medicago truncatula HOM05D001813 ORTHO05D008124 2.8e-16 88.6 92 51.1
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea HOM05D001813 ORTHO05D008124 3.6e-16 88.2 92 51.1
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea HOM05D001813 ORTHO05D008124 3.6e-16 88.2 92 51.1
DCAR_002126 Daucus carota HOM05D001813 ORTHO05D008124 3.6e-16 88.2 84 53.6
Glyma.20G053200 Glycine max HOM05D001813 ORTHO05D008124 1.4e-15 86.3 92 52.2
SHI04312 Sapria himalayana HOM05D001813 ORTHO05D008124 1.4e-15 86.3 97 47.4
Lalb_Chr02g0158501 Lupinus albus HOM05D001813 ORTHO05D008124 5.2e-15 84.3 92 48.9
MBI19_g32309_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 5.2e-15 84.3 80 57.5
MBI19_g40249_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 5.2e-15 84.3 80 57.5
Os11g0128800 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 2.0e-14 82.4 89 49.4
Os12g0125400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 2.0e-14 82.4 89 49.4
VMungo0540G0768 Vigna mungo HOM05D001813 ORTHO05D008124 9.8e-14 80.1 84 52.4
ATR0068G110 Amborella trichopoda HOM05D001813 ORTHO05D008124 1.7e-13 79.3 89 48.3
unitig_699.g19161 Utricularia gibba HOM05D001813 ORTHO05D008124 8.3e-13 77.0 88 47.7
PSO675G1710 Papaver somniferum HOM05D001813 ORTHO05D008124 3.1e-12 75.1 91 44.0
ClCG03G014190 Citrullus lanatus HOM05D001813 ORTHO05D008124 1.1e-09 66.6 87 42.5
Nitab4.5_0002567g0070 Nicotiana tabacum HOM05D001813 ORTHO05D008124 3.3e-09 65.1 68 51.5
CSS0034856 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.8e-07 59.3 51 56.9
CSS0034171 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 2.3e-07 58.9 51 54.9
vmacro04108 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 3.0e-07 58.5 67 50.7
COL.COLO4_18373 Corchorus olitorius HOM05D001813 ORTHO05D008124 5.2e-07 57.8 48 60.4
SMO364G0184 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 6.8e-07 57.4 78 43.6
SMO112G0109 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 2.0e-06 55.8 81 44.4
HPP92_026681 Vanilla planifolia HOM05D001813 ORTHO05D008124 2.0e-06 55.8 51 54.9
CBR_g24080 Chara braunii HOM05D001813 ORTHO05D008124 3.4e-06 55.1 89 39.3
vmacro04107 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 9.8e-06 53.5 47 57.4


User provided reference genes

Program Settings