Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 5.9e-209 730.7 393 100.0
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 8.5e-115 417.9 425 61.9
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.5e-95 354.0 368 61.1
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 5.2e-80 302.4 427 51.5
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 6.4e-46 189.1 369 39.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 7.3e-34 149.1 413 33.2
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 3.6e-33 146.7 413 32.7
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.2e-33 146.0 411 32.8
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.4e-32 144.8 401 32.9
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.8e-32 144.4 399 34.6
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.8e-32 144.4 457 33.0
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.4e-32 144.1 393 32.3
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 9.0e-32 142.1 412 33.5
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.5e-31 141.4 445 33.7
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 4.4e-31 139.8 421 32.3
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 2.9e-30 137.1 415 31.6
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 2.9e-30 137.1 447 33.6
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 6.4e-30 136.0 426 32.2
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.5e-28 130.2 402 34.1
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 6.0e-28 129.4 416 32.2
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 6.0e-28 129.4 387 32.6
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.3e-27 128.3 411 33.8
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 8.7e-27 125.6 440 31.4
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.3e-25 121.7 451 30.6
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.8e-25 120.6 392 32.9
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 4.8e-25 119.8 424 31.8
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.2e-25 119.4 416 30.5
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.4e-24 118.2 381 32.5
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 2.4e-24 117.5 398 31.4
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 3.1e-24 117.1 416 30.3
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 5.3e-24 116.3 397 30.0
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.5e-23 114.8 389 31.4
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.5e-23 114.8 386 34.5
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.3e-22 111.7 363 31.1
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.7e-22 111.3 372 32.5
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.8e-22 110.2 438 28.8
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 6.4e-22 109.4 325 32.9
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.1e-21 108.6 444 29.3
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-21 108.6 386 33.4
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 1.9e-21 107.8 324 34.6
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.2e-21 106.7 373 28.4
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 4.2e-21 106.7 440 30.9
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 2.1e-20 104.4 408 29.9
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 6.0e-20 102.8 376 30.1
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 6.0e-20 102.8 385 30.1
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.3e-19 100.9 389 29.6
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.9e-19 100.1 385 33.0
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 6.7e-19 99.4 380 31.3
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.5e-18 98.2 401 29.2
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.5e-18 97.4 368 30.7
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 5.6e-18 96.3 355 31.0
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 7.4e-18 95.9 378 29.4
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.8e-17 94.0 432 28.2
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 4.8e-17 93.2 407 30.2
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 6.2e-17 92.8 380 32.9
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 1.4e-16 91.7 401 30.4
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.8e-16 91.3 418 27.3
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.4e-16 90.9 374 29.4
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 5.3e-16 89.7 405 29.9
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 5.3e-16 89.7 421 27.6
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.9e-16 89.4 401 30.2
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 2.0e-15 87.8 400 30.5
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.0e-15 87.8 386 26.7
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 2.6e-15 87.4 390 28.5
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.4e-15 87.0 456 28.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 3.4e-15 87.0 393 29.8
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 3.4e-15 87.0 390 27.9
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.5e-15 86.7 395 26.3
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 7.6e-15 85.9 418 26.8
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 9.9e-15 85.5 421 29.5
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 1.3e-14 85.1 390 30.5
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 1.7e-14 84.7 399 29.6
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 2.2e-14 84.3 382 30.9
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 2.2e-14 84.3 416 28.8
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 2.2e-14 84.3 286 32.9
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.9e-14 83.2 389 29.3
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 4.9e-14 83.2 403 28.5
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 6.4e-14 82.8 398 29.1
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 1.4e-13 81.6 399 28.8
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.4e-13 81.6 388 29.9
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 2.4e-13 80.9 385 27.8
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 4.2e-13 80.1 407 28.3
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 7.1e-13 79.3 390 27.7
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 9.3e-13 79.0 441 26.3
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 9.3e-13 79.0 416 26.0
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.2e-12 78.6 435 27.8
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.2e-12 78.6 408 26.2
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.6e-12 78.2 411 28.2
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.6e-12 78.2 428 26.4
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.7e-12 77.4 393 26.7
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 2.7e-12 77.4 414 29.2
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 3.5e-12 77.0 404 27.0
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 3.5e-12 77.0 408 28.2
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 3.5e-12 77.0 404 28.2
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.6e-12 76.6 395 25.3
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 4.6e-12 76.6 381 29.7
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 6.0e-12 76.3 432 25.9
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 7.9e-12 75.9 437 26.1
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 1.0e-11 75.5 405 28.6
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 5.1e-11 73.2 385 26.5
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 5.1e-11 73.2 368 29.3
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 6.7e-11 72.8 384 26.3
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 8.7e-11 72.4 417 26.1
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 1.5e-10 71.6 418 26.3
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 1.9e-10 71.2 392 27.3
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.3e-10 70.5 370 27.3
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.3e-10 70.5 412 25.2
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 7.4e-10 69.3 370 29.7
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 7.4e-10 69.3 424 24.5
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 9.6e-10 68.9 382 27.2
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.3e-09 68.6 375 27.2
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 1.6e-09 68.2 364 28.8
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.6e-09 68.2 374 27.0
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.6e-09 68.2 387 28.2
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.6e-09 68.2 364 25.3
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 2.8e-09 67.4 386 26.2
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 2.8e-09 67.4 386 26.2
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 3.7e-09 67.0 397 27.2
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 4.8e-09 66.6 397 26.4
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 4.8e-09 66.6 198 31.3
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 4.8e-09 66.6 414 25.4
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 6.2e-09 66.2 385 29.1
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 6.2e-09 66.2 419 26.0
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 6.2e-09 66.2 400 28.5
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 8.2e-09 65.9 396 26.5
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 1.1e-08 65.5 373 26.3
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 1.4e-08 65.1 383 25.8
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 1.8e-08 64.7 387 23.8
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 3.1e-08 63.9 394 26.6
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 4.0e-08 63.5 326 28.8
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 6.9e-08 62.8 378 25.9
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-07 62.0 424 25.0
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 1.2e-07 62.0 398 26.9
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.2e-07 62.0 237 29.1
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 1.5e-07 61.6 375 26.7
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 2.0e-07 61.2 409 24.0
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.6e-07 60.8 181 29.8
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.4e-07 60.5 407 26.5
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 5.8e-07 59.7 391 26.6
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.8e-07 59.7 163 36.8
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 7.6e-07 59.3 378 26.2
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 1.0e-06 58.9 401 26.9
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.7e-06 58.2 379 26.4
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 2.2e-06 57.8 339 27.4
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.8e-06 57.0 417 25.4
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 3.8e-06 57.0 282 31.2
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 4.9e-06 56.6 407 25.3
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 8.4e-06 55.8 412 28.2
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 8.4e-06 55.8 415 26.0


User provided reference genes

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