Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 7.7e-86 320.9 214 100.0
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 8.3e-24 114.8 275 33.8
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 4.6e-22 109.0 93 60.2
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 3.0e-21 106.3 282 32.6
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.9e-20 103.6 97 60.8
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 3.3e-20 102.8 103 54.4
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.8e-19 99.8 300 32.3
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 1.1e-18 97.8 96 54.2
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 3.1e-18 96.3 116 49.1
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.1e-18 96.3 116 49.1
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 8.9e-18 94.7 97 57.7
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.0e-17 93.6 94 55.3
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 2.0e-17 93.6 101 54.5
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 2.0e-17 93.6 96 54.2
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 3.4e-17 92.8 97 55.7
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 3.4e-17 92.8 118 45.8
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.4e-17 92.8 118 45.8
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.4e-17 92.4 118 45.8
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 7.6e-17 91.7 120 46.7
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 7.6e-17 91.7 118 48.3
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 1.3e-16 90.9 112 51.8
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 2.9e-16 89.7 91 50.5
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.9e-16 89.7 118 44.1
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 6.4e-16 88.6 113 48.7
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.9e-15 87.0 75 60.0
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 5.4e-15 85.5 124 41.9
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 5.4e-15 85.5 109 45.0
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 7.1e-15 85.1 109 42.2
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 9.2e-15 84.7 114 50.0
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 2.7e-14 83.2 77 55.8
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 3.5e-14 82.8 129 44.2
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 4.6e-14 82.4 114 45.6
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.0e-13 81.3 82 54.9
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 1.0e-13 81.3 95 53.7
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 1.0e-13 81.3 95 53.7
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 1.0e-13 81.3 95 53.7
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.0e-13 81.3 133 41.4
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 1.7e-13 80.5 77 51.9
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.3e-13 80.1 75 54.7
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 3.9e-13 79.3 77 55.8
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 3.9e-13 79.3 99 50.5
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 3.9e-13 79.3 82 53.7
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 3.9e-13 79.3 96 46.9
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 5.1e-13 79.0 73 54.8
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 5.1e-13 79.0 114 46.5
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 8.6e-13 78.2 147 36.1
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 8.6e-13 78.2 132 40.2
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 8.6e-13 78.2 96 46.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 1.1e-12 77.8 73 54.8
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.9e-12 77.0 125 40.8
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 2.5e-12 76.6 110 45.5
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 4.3e-12 75.9 92 47.8
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 7.3e-12 75.1 92 47.8
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 2.1e-11 73.6 79 46.8
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 4.7e-11 72.4 80 51.2
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 6.2e-11 72.0 115 42.6
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 8.1e-11 71.6 78 46.2
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.1e-10 71.2 133 38.3
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.1e-10 71.2 63 58.7
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.1e-10 71.2 63 58.7
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.4e-10 70.9 79 50.6
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 1.8e-10 70.5 80 50.0
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 1.8e-10 70.5 80 50.0
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 3.1e-10 69.7 80 50.0
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 4.0e-10 69.3 79 49.4
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 4.0e-10 69.3 96 43.8
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 6.9e-10 68.6 62 58.1
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 2.0e-09 67.0 80 47.5
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 2.6e-09 66.6 58 56.9
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 3.4e-09 66.2 59 55.9
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 3.4e-09 66.2 62 56.5
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 3.4e-09 66.2 94 41.5
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 7.6e-09 65.1 122 39.3
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 7.6e-09 65.1 81 44.4
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 7.6e-09 65.1 84 39.3
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 9.9e-09 64.7 91 41.8
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 9.9e-09 64.7 74 50.0
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.3e-08 64.3 91 42.9
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 1.3e-08 64.3 100 40.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.7e-08 63.9 91 44.0
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 1.7e-08 63.9 58 56.9
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 2.2e-08 63.5 62 53.2
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 3.8e-08 62.8 91 42.9
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 3.8e-08 62.8 94 48.9
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 4.9e-08 62.4 91 40.7
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 4.9e-08 62.4 88 44.3
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 4.9e-08 62.4 69 46.4
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 8.4e-08 61.6 91 41.8
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 8.4e-08 61.6 91 41.8
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.1e-07 61.2 74 47.3
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 1.4e-07 60.8 91 42.9
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.4e-07 60.8 91 42.9
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.4e-07 60.8 91 42.9
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 1.4e-07 60.8 91 40.7
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 2.4e-07 60.1 74 50.0
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 3.2e-07 59.7 91 40.7
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 4.2e-07 59.3 91 41.8
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.2e-06 57.8 91 39.6
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 2.1e-06 57.0 91 39.6
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 2.7e-06 56.6 58 50.0
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 4.6e-06 55.8 92 39.1


User provided reference genes

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