Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g219160 Amaranthus hybridus HOM05D004273 ORTHO05D005041 6.7e-190 667.2 330 100.0
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 4.4e-117 425.2 281 74.0
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.1e-114 416.4 281 73.3
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 1.6e-111 406.8 272 73.9
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 2.5e-96 356.3 269 65.8
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 8.8e-81 304.7 269 56.5
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 8.2e-79 298.1 286 54.2
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 1.8e-78 297.0 287 54.0
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 5.3e-78 295.4 283 56.5
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 2.0e-77 293.5 291 51.5
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 1.7e-76 290.4 263 57.0
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 5.0e-76 288.9 287 52.3
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 5.0e-76 288.9 281 55.9
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 5.0e-76 288.9 275 54.9
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.4e-75 287.3 278 55.0
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 2.5e-75 286.6 257 56.0
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 2.5e-75 286.6 287 51.2
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 7.2e-75 285.0 276 53.6
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 1.6e-74 283.9 274 54.7
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 1.8e-73 280.4 265 57.0
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 3.9e-73 279.3 277 54.9
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 6.7e-73 278.5 288 50.3
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 8.8e-73 278.1 230 58.7
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 8.8e-73 278.1 238 57.1
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 2.6e-72 276.6 266 55.3
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 2.6e-72 276.6 258 55.0
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 2.6e-72 276.6 290 54.1
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 9.7e-72 274.6 231 57.1
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 9.7e-72 274.6 244 56.1
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 1.3e-71 274.2 259 54.4
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 2.2e-71 273.5 256 53.5
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 2.2e-71 273.5 257 54.1
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 4.8e-71 272.3 282 52.5
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 6.3e-71 271.9 255 54.5
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 8.2e-71 271.6 257 53.7
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 8.2e-71 271.6 255 53.3
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 1.1e-70 271.2 271 51.3
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 1.4e-70 270.8 259 53.7
Lj1A935G50 Lonicera japonica HOM05D004273 ORTHO05D005041 1.8e-70 270.4 286 49.3
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 3.1e-70 269.6 286 47.9
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 4.1e-70 269.2 255 50.6
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 4.1e-70 269.2 231 56.7
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 5.3e-70 268.9 272 51.5
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 5.3e-70 268.9 287 50.5
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 7.0e-70 268.5 310 47.7
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 7.0e-70 268.5 274 50.0
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 1.2e-69 267.7 237 55.3
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 1.2e-69 267.7 234 56.4
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 2.0e-69 266.9 220 59.5
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 2.6e-69 266.5 241 56.0
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 4.5e-69 265.8 272 48.9
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 5.9e-69 265.4 231 56.3
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 7.7e-69 265.0 233 55.8
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 7.7e-69 265.0 287 48.4
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 1.0e-68 264.6 278 49.6
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.0e-68 264.6 231 56.7
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 1.3e-68 264.2 244 54.5
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 1.7e-68 263.8 269 50.6
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 2.2e-68 263.5 275 48.7
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 2.2e-68 263.5 274 51.1
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 2.2e-68 263.5 274 50.0
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 2.9e-68 263.1 272 50.4
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 2.9e-68 263.1 231 55.8
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 3.8e-68 262.7 280 46.8
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 1.1e-67 261.2 286 50.7
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.5e-67 260.8 283 52.3
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.5e-67 260.8 280 50.0
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 1.9e-67 260.4 280 49.3
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 2.5e-67 260.0 241 55.6
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 3.2e-67 259.6 275 49.1
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 3.2e-67 259.6 290 49.3
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 7.2e-67 258.5 281 49.1
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 9.4e-67 258.1 271 50.2
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 2.1e-66 256.9 260 50.0
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 2.1e-66 256.9 237 53.6
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 4.7e-66 255.8 260 50.0
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 8.0e-66 255.0 254 49.2
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 8.0e-66 255.0 254 49.2
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 8.0e-66 255.0 260 50.8
vmacro03093 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 8.0e-66 255.0 281 52.7
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 1.8e-65 253.8 257 50.6
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 1.8e-65 253.8 259 51.7
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 2.3e-65 253.4 254 48.8
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 3.9e-65 252.7 257 50.6
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 3.9e-65 252.7 275 46.9
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 5.2e-65 252.3 256 50.4
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 6.7e-65 251.9 254 48.8
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 2.0e-64 250.4 255 49.4
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 2.6e-64 250.0 244 52.9
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 3.3e-64 249.6 277 45.5
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 5.7e-64 248.8 263 49.8
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 7.4e-64 248.4 259 49.0
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 1.3e-63 247.7 279 48.0
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 1.3e-63 247.7 287 47.0
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 1.3e-63 247.7 283 48.1
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 1.7e-63 247.3 272 46.3
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 2.8e-63 246.5 238 52.9
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 2.8e-63 246.5 279 48.0
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 4.8e-63 245.7 258 48.1
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.1e-62 244.6 258 47.7
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 1.1e-62 244.6 271 44.3
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 1.4e-62 244.2 302 42.7
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 1.8e-62 243.8 302 42.7
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 2.4e-62 243.4 258 46.5
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 2.4e-62 243.4 262 49.2
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 3.1e-62 243.0 237 50.6
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 3.1e-62 243.0 281 46.6
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 7.0e-62 241.9 255 47.8
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 9.1e-62 241.5 262 48.5
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 1.2e-61 241.1 279 49.8
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 1.2e-61 241.1 256 46.1
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 1.2e-61 241.1 262 50.0
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 1.6e-61 240.7 229 51.1
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 1.6e-61 240.7 258 50.0
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 2.0e-61 240.4 231 51.9
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 2.6e-61 240.0 257 49.8
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 5.9e-61 238.8 256 48.4
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 2.9e-60 236.5 257 52.1
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 8.5e-60 235.0 235 49.8
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 2.5e-59 233.4 201 56.2
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 4.7e-58 229.2 286 39.5
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 1.2e-56 224.6 259 47.5
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 2.0e-56 223.8 272 42.6
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 1.7e-55 220.7 256 48.4
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 3.7e-55 219.5 257 44.4
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 6.3e-55 218.8 265 44.5
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 4.1e-54 216.1 286 40.9
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.7e-53 213.4 265 44.5
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 7.7e-53 211.8 230 47.8
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 1.0e-52 211.5 287 40.1
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 2.9e-52 209.9 233 45.9
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 1.5e-51 207.6 232 47.0
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 2.1e-50 203.8 268 39.9
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 1.0e-44 184.9 178 55.1
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.7e-44 184.1 245 42.0
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 1.2e-42 177.9 268 36.6
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 1.0e-41 174.9 169 53.3
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 5.2e-41 172.6 267 37.1
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 4.4e-40 169.5 112 67.0
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 1.7e-39 167.5 222 41.4
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 1.1e-35 154.8 228 36.8
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 4.6e-29 132.9 282 31.6
DCAR_027649 Daucus carota HOM05D004273 ORTHO05D005041 3.9e-28 129.8 219 37.0
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 2.5e-27 127.1 114 48.2
Lj8C85T7 Lonicera japonica HOM05D004273 ORTHO05D005041 2.5e-27 127.1 148 45.3
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 2.0e-24 117.5 105 48.6
Actinidia07724 Actinidia chinensis HOM05D004273 ORTHO05D005041 7.5e-24 115.5 87 56.3
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 1.4e-22 111.3 103 47.6
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 1.2e-21 108.2 117 50.4
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 1.6e-21 107.8 227 28.2
unitig_748.g7756 Utricularia gibba HOM05D004273 ORTHO05D005041 6.0e-21 105.9 171 37.4
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 4.3e-19 99.8 87 52.9
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 1.1e-14 85.1 85 54.1
TPR.G17285 Trifolium pratense HOM05D004273 ORTHO05D005041 1.0e-12 78.6 170 34.7
HPP92_019826 Vanilla planifolia HOM05D000050 ORTHO05D005041 1.7e-07 61.2 60 50.0


User provided reference genes

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