Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g219150 Amaranthus hybridus HOM05D004273 ORTHO05D005041 3.8e-108 394.8 193 100.0
EL10Ac7g15984 Beta vulgaris HOM05D004273 ORTHO05D005041 2.0e-72 276.2 194 72.2
AUR62001817 Chenopodium quinoa HOM05D004273 ORTHO05D005041 5.3e-70 268.1 194 70.1
AUR62009603 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.2e-69 266.9 194 68.6
Hund04983 Selenicereus undatus HOM05D004273 ORTHO05D005041 1.7e-55 219.9 194 56.2
Dinv32873 Davidia involucrata HOM05D004273 ORTHO05D005041 1.6e-42 176.8 198 47.5
Peaxi162Scf00679g00214 Petunia axillaris HOM05D004273 ORTHO05D005041 3.6e-42 175.6 194 46.4
Nitab4.5_0001838g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 4.7e-42 175.3 194 46.9
Potri.009G028700 Populus trichocarpa HOM05D004273 ORTHO05D005041 4.7e-42 175.3 191 45.0
Solyc06g075980.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 6.8e-41 171.4 194 45.4
Nitab4.5_0001304g0060 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.2e-40 170.6 192 45.8
Dinv01561 Davidia involucrata HOM05D004273 ORTHO05D005041 2.6e-40 169.5 199 46.7
Sopen06g032400 Solanum pennellii HOM05D004273 ORTHO05D005041 2.6e-40 169.5 194 44.8
TAR633G2082 Trochodendron aralioides HOM05D004273 ORTHO05D005041 2.6e-40 169.5 195 44.1
Potri.001G237400 Populus trichocarpa HOM05D004273 ORTHO05D005041 4.4e-40 168.7 186 45.7
PGSC0003DMG400030404 Solanum tuberosum HOM05D004273 ORTHO05D005041 4.4e-40 168.7 194 44.8
GSVIVG01025001001 Vitis vinifera HOM05D004273 ORTHO05D005041 4.4e-40 168.7 185 45.9
Sabra16G0143100 Salix brachista HOM05D004273 ORTHO05D005041 7.5e-40 167.9 187 44.9
Cfa011474 Carpinus fangiana HOM05D004273 ORTHO05D005041 9.8e-40 167.5 192 45.8
QL01p032775 Quercus lobata HOM05D004273 ORTHO05D005041 1.3e-39 167.2 200 45.5
Sabra09G0019900 Salix brachista HOM05D004273 ORTHO05D005041 1.3e-39 167.2 192 46.4
CSS0029075 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.7e-39 166.8 196 44.9
Hma1.2p1_0624F.1_g191440 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 1.7e-39 166.8 207 44.9
Lj1A156G61 Lonicera japonica HOM05D004273 ORTHO05D005041 2.2e-39 166.4 199 45.7
CiPaw.13G097100 Carya illinoinensis HOM05D004273 ORTHO05D005041 3.7e-39 165.6 192 44.8
Haze_24060 Corylus avellana HOM05D004273 ORTHO05D005041 3.7e-39 165.6 194 46.9
CAN.G394.46 Capsicum annuum HOM05D004273 ORTHO05D005041 4.9e-39 165.2 194 43.8
Cpa.g.sc190.7 Carica papaya HOM05D004273 ORTHO05D005041 1.4e-38 163.7 201 43.3
Sed0008303 Sechium edule HOM05D004273 ORTHO05D005041 1.4e-38 163.7 191 45.5
Manes.04G033100 Manihot esculenta HOM05D004273 ORTHO05D005041 1.8e-38 163.3 190 44.2
Duzib168G0407 Durio zibethinus HOM05D004273 ORTHO05D005041 2.4e-38 162.9 196 44.9
PGR102G1220 Punica granatum HOM05D004273 ORTHO05D005041 3.1e-38 162.5 194 46.4
Dinv31442 Davidia involucrata HOM05D004273 ORTHO05D005041 4.1e-38 162.2 191 42.4
Gorai.003G134500 Gossypium raimondii HOM05D004273 ORTHO05D005041 4.1e-38 162.2 189 46.0
Oeu017093.1 Olea europaea HOM05D004273 ORTHO05D005041 1.2e-37 160.6 190 43.7
CsaV3_6G017020 Cucumis sativus L. HOM05D004273 ORTHO05D005041 1.6e-37 160.2 192 44.3
HanXRQChr02g0044491 Helianthus annuus HOM05D004273 ORTHO05D005041 1.6e-37 160.2 192 44.8
TWI31G0117 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 1.6e-37 160.2 192 43.8
ClCG02G020320 Citrullus lanatus HOM05D004273 ORTHO05D005041 2.0e-37 159.8 192 44.8
Gohir.D03G127800 Gossypium hirsutum HOM05D004273 ORTHO05D005041 2.7e-37 159.5 189 46.0
TPR.G10209 Trifolium pratense HOM05D004273 ORTHO05D005041 2.7e-37 159.5 187 43.9
MELO3C013689.2 Cucumis melo HOM05D004273 ORTHO05D005041 4.5e-37 158.7 192 44.3
MSTRG.1791 Avicennia marina HOM05D004273 ORTHO05D005041 5.9e-37 158.3 195 43.6
Gohir.A03G040200 Gossypium hirsutum HOM05D004273 ORTHO05D005041 5.9e-37 158.3 189 45.5
COL.COLO4_18478 Corchorus olitorius HOM05D004273 ORTHO05D005041 7.7e-37 157.9 195 44.1
MBI05_g06541_MAGBIO Magnolia biondii HOM05D004273 ORTHO05D005041 7.7e-37 157.9 186 41.9
CSS0043051 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 1.3e-36 157.1 192 43.2
Prupe.6G080900 Prunus persica HOM05D004273 ORTHO05D005041 1.3e-36 157.1 192 42.2
ECA236G0424 Erigeron canadensis HOM05D004273 ORTHO05D005041 1.7e-36 156.8 198 43.4
Lj3g0025927 Lotus japonicus HOM05D004273 ORTHO05D005041 2.3e-36 156.4 185 44.3
THA.LOC104799449 Tarenaya hassleriana HOM05D004273 ORTHO05D005041 2.3e-36 156.4 192 42.2
Ciclev10028607m.g Citrus clementina HOM05D004273 ORTHO05D005041 2.9e-36 156.0 192 42.7
Nn2g10411 Nelumbo nucifera HOM05D004273 ORTHO05D005041 2.9e-36 156.0 196 41.8
FvH4_3g35600 Fragaria vesca HOM05D004273 ORTHO05D005041 5.0e-36 155.2 194 40.2
FAN16G0116 Fragaria x ananassa HOM05D004273 ORTHO05D005041 5.0e-36 155.2 194 40.2
FAN11G1845 Fragaria x ananassa HOM05D004273 ORTHO05D005041 6.6e-36 154.8 194 40.2
Lsat_1_v5_gn_8_77981 Lactuca sativa HOM05D000739 ORTHO05D005041 6.6e-36 154.8 200 41.5
TAR636G0691 Trochodendron aralioides HOM05D004273 ORTHO05D005041 8.6e-36 154.5 189 43.4
Ca_19181_v3 Cicer arietinum L. HOM05D004273 ORTHO05D005041 1.1e-35 154.1 187 44.4
Atru.chr3.3842_Atru.chr3.3843 Acer truncatum HOM05D004273 ORTHO05D005041 1.5e-35 153.7 192 44.3
Thecc.09G325000 Theobroma cacao HOM05D004273 ORTHO05D005041 1.5e-35 153.7 198 41.4
Zm00001eb062630 Zea mays HOM05D004273 ORTHO05D005041 1.5e-35 153.7 191 41.4
Os03g0820900 Oryza sativa ssp. japonica HOM05D004273 ORTHO05D005041 2.5e-35 152.9 188 41.0
Medtr4g063605 Medicago truncatula HOM05D004273 ORTHO05D005041 3.3e-35 152.5 193 42.5
RcHm_v2.0_Chr5g0063781 Rosa chinensis HOM05D004273 ORTHO05D005041 3.3e-35 152.5 194 40.2
TWI79G1222 Tripterygium wilfordii HOM05D004273 ORTHO05D005041 4.2e-35 152.1 192 41.7
BcaB02g10723 Brassica carinata HOM05D004273 ORTHO05D005041 5.5e-35 151.8 196 40.3
FAN21G1625 Fragaria x ananassa HOM05D004273 ORTHO05D005041 5.5e-35 151.8 194 39.7
MD03G1096600 Malus domestica HOM05D004273 ORTHO05D005041 9.5e-35 151.0 194 40.2
Psat7g217720 Pisum sativum HOM05D004273 ORTHO05D005041 1.2e-34 150.6 195 41.5
Zm00001eb211720 Zea mays HOM05D004273 ORTHO05D005041 1.6e-34 150.2 195 39.5
A06p27020 Brassica napus HOM05D004273 ORTHO05D005041 2.1e-34 149.8 192 40.6
DCAR_005310 Daucus carota HOM05D004273 ORTHO05D005041 2.1e-34 149.8 191 42.4
Actinidia07045 Actinidia chinensis HOM05D004273 ORTHO05D005041 3.6e-34 149.1 155 50.3
Thhalv10002507m.g Eutrema salsugineum HOM05D004273 ORTHO05D005041 3.6e-34 149.1 197 38.6
Migut.E01325 Erythranthe guttata HOM05D004273 ORTHO05D005041 4.7e-34 148.7 205 42.4
BraA06t25640Z Brassica rapa HOM05D004273 ORTHO05D005041 8.0e-34 147.9 196 39.3
Glyma.15G039800 Glycine max HOM05D004273 ORTHO05D005041 1.0e-33 147.5 195 42.1
PSO384G1393 Papaver somniferum HOM05D004273 ORTHO05D005041 1.0e-33 147.5 192 37.5
BcaC01g02262 Brassica carinata HOM05D004273 ORTHO05D005041 3.0e-33 146.0 196 39.3
C03p67250 Brassica napus HOM05D004273 ORTHO05D005041 3.0e-33 146.0 196 39.3
MD11G1142800 Malus domestica HOM05D004273 ORTHO05D005041 3.0e-33 146.0 200 38.0
Rhsim13G0085100 Rhododendron simsii HOM05D004273 ORTHO05D005041 3.0e-33 146.0 190 42.1
AT3G46450 Arabidopsis thaliana HOM05D004273 ORTHO05D005041 4.0e-33 145.6 196 38.3
AL5G25280 Arabidopsis lyrata HOM05D004273 ORTHO05D005041 5.2e-33 145.2 196 38.8
PSO339G3737 Papaver somniferum HOM05D004273 ORTHO05D005041 5.2e-33 145.2 192 38.5
SGA_v2.0_scaffold111G31385 Striga asiatica HOM05D004273 ORTHO05D005041 6.8e-33 144.8 197 40.6
BolC3t19006H Brassica oleracea HOM05D004273 ORTHO05D005041 1.5e-32 143.7 196 38.8
arahy.Tifrunner.gnm1.ann1.N7EFUM Arachis hypogaea HOM05D004273 ORTHO05D005041 2.6e-32 142.9 197 41.6
Sp5g15230 Schrenkiella parvula HOM05D004273 ORTHO05D005041 2.6e-32 142.9 196 38.3
Aqoxy4G02965 Aquilegia oxysepala HOM05D004273 ORTHO05D005041 5.7e-32 141.7 189 39.2
Glyma.13G334700 Glycine max HOM05D004273 ORTHO05D005041 5.7e-32 141.7 194 40.7
SalBow8G5260 Salvia bowleyana HOM05D004273 ORTHO05D005041 5.7e-32 141.7 196 38.8
CARHR155380 Cardamine hirsuta HOM05D004273 ORTHO05D005041 7.5e-32 141.4 199 37.7
Aa31LG4G15500 Aethionema arabicum HOM05D004273 ORTHO05D005041 9.8e-32 141.0 205 38.5
Carub.0005s1225 Capsella rubella HOM05D004273 ORTHO05D005041 1.7e-31 140.2 196 37.8
Hma1.2p1_0533F.1_g173530 Hydrangea macrophylla HOM05D004273 ORTHO05D005041 2.2e-31 139.8 192 40.6
Lalb_Chr24g0394211 Lupinus albus HOM05D004273 ORTHO05D005041 2.2e-31 139.8 194 39.7
arahy.Tifrunner.gnm1.ann1.T00HES Arachis hypogaea HOM05D004273 ORTHO05D005041 2.8e-31 139.4 197 40.6
Actinidia02958 Actinidia chinensis HOM05D004273 ORTHO05D005041 3.7e-31 139.0 179 41.3
Cc01_g12600 Coffea canephora HOM05D004273 ORTHO05D005041 4.9e-31 138.7 186 42.5
Glyma.11G141100 Glycine max HOM05D004273 ORTHO05D005041 8.3e-31 137.9 186 41.4
Duzib170G0539 Durio zibethinus HOM05D004273 ORTHO05D005041 1.4e-30 137.1 163 44.8
Lalb_Chr03g0026761 Lupinus albus HOM05D004273 ORTHO05D005041 1.4e-30 137.1 195 39.0
Lalb_Chr19g0137751 Lupinus albus HOM05D004273 ORTHO05D005041 1.4e-30 137.1 183 40.4
CDE04G0924 Ceratophyllum demersum HOM05D004273 ORTHO05D005041 2.4e-30 136.3 188 39.4
CAN.G1013.9 Capsicum annuum HOM05D004273 ORTHO05D005041 1.6e-29 133.7 221 34.8
SEGI_06894 Sequoiadendron giganteum HOM05D004273 ORTHO05D005041 2.0e-29 133.3 190 35.3
arahy.Tifrunner.gnm1.ann1.44D9RB Arachis hypogaea HOM05D004273 ORTHO05D005041 4.6e-29 132.1 185 42.2
ATR0559G270 Amborella trichopoda HOM05D004273 ORTHO05D005041 1.0e-28 131.0 197 37.6
arahy.Tifrunner.gnm1.ann1.0ME452 Arachis hypogaea HOM05D004273 ORTHO05D005041 1.0e-28 131.0 184 40.8
VMungo1127G1030 Vigna mungo HOM05D004273 ORTHO05D005041 1.0e-28 131.0 185 41.6
AUR62038361 Chenopodium quinoa HOM05D004273 ORTHO05D005041 1.7e-28 130.2 116 49.1
Eucgr.B02383 Eucalyptus grandis HOM05D004273 ORTHO05D005041 2.9e-28 129.4 195 38.5
Phvul.011G065600 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 2.9e-28 129.4 185 39.5
Sc06g0002640 Simmondsia chinensis HOM05D004273 ORTHO05D005041 3.9e-28 129.0 113 53.1
EL10Ac2g03411 Beta vulgaris HOM05D004273 ORTHO05D005041 6.6e-28 128.3 113 50.4
Cc02_g08070 Coffea canephora HOM05D004273 ORTHO05D005041 6.6e-28 128.3 115 50.4
Hund12542 Selenicereus undatus HOM05D004273 ORTHO05D005041 8.6e-28 127.9 117 50.4
Solyc05g054570.3 Solanum lycopersicum HOM05D004273 ORTHO05D005041 8.6e-28 127.9 211 32.7
VMungo1080G0602 Vigna mungo HOM05D004273 ORTHO05D005041 8.6e-28 127.9 192 37.0
Sopen05g033050 Solanum pennellii HOM05D004273 ORTHO05D005041 1.1e-27 127.5 211 33.2
unitig_747.g21363 Utricularia gibba HOM05D004273 ORTHO05D005041 1.5e-27 127.1 194 38.7
HanXRQChr14g0458231 Helianthus annuus HOM05D004273 ORTHO05D005041 2.5e-27 126.3 114 50.0
Peaxi162Scf00015g00152 Petunia axillaris HOM05D004273 ORTHO05D005041 3.3e-27 125.9 224 32.6
PGSC0003DMG400023525 Solanum tuberosum HOM05D004273 ORTHO05D005041 5.6e-27 125.2 213 33.8
CSS0019329 Camellia sinensis var. sinensis HOM05D004273 ORTHO05D005041 9.5e-27 124.4 140 44.3
Lsat_1_v5_gn_2_116561 Lactuca sativa HOM05D004273 ORTHO05D005041 9.5e-27 124.4 119 49.6
Ah.16g107130 Amaranthus hybridus HOM05D004273 ORTHO05D005041 1.6e-26 123.6 181 36.5
ECA238G2787 Erigeron canadensis HOM05D004273 ORTHO05D005041 1.6e-26 123.6 181 36.5
Phvul.L004243 Phaseolus vulgaris HOM05D004273 ORTHO05D005041 6.1e-26 121.7 195 35.9
HanXRQChr07g0201161 Helianthus annuus HOM05D004273 ORTHO05D005041 8.0e-26 121.3 125 44.8
Nitab4.5_0001831g0040 Nicotiana tabacum HOM05D004273 ORTHO05D005041 1.0e-25 120.9 224 33.5
Nitab4.5_0014877g0010 Nicotiana tabacum HOM05D004273 ORTHO05D005041 2.3e-25 119.8 224 32.6
HPP92_019085 Vanilla planifolia HOM05D004273 ORTHO05D005041 9.8e-24 114.4 193 32.1
Mapoly0153s0026 Marchantia polymorpha HOM05D004273 ORTHO05D005041 4.9e-23 112.1 199 31.2
AagrBONN_evm.TU.Sc2ySwM_117.239 Anthoceros agrestis HOM05D004273 ORTHO05D005041 1.5e-19 100.5 120 37.5
Pp3c14_19130 Physcomitrium patens HOM05D004273 ORTHO05D005041 3.3e-19 99.4 208 28.4
vmacro03094 Vaccinium macrocarpon HOM05D004273 ORTHO05D005041 5.6e-19 98.6 71 59.2
Sc06g0008260 Simmondsia chinensis HOM05D004273 ORTHO05D005041 1.1e-17 94.4 88 54.5
SMO266G0022 Selaginella moellendorffii HOM05D004273 ORTHO05D005041 1.4e-17 94.0 194 28.9
AUR62040968 Chenopodium quinoa HOM05D004273 ORTHO05D005041 2.2e-15 86.7 72 52.8
Pp3c9_11070 Physcomitrium patens HOM05D004273 ORTHO05D005041 3.2e-14 82.8 121 36.4
Actinidia07731 Actinidia chinensis HOM05D004273 ORTHO05D005041 4.3e-11 72.4 55 58.2
CBR_g4074 Chara braunii HOM05D004273 ORTHO05D005041 2.1e-10 70.1 115 33.0
FvH4_3g35570 Fragaria vesca HOM05D004273 ORTHO05D005041 4.7e-10 68.9 130 33.8
FAN11G3764 Fragaria x ananassa HOM05D004273 ORTHO05D005041 6.2e-10 68.6 130 33.8
Sopen04g034280 Solanum pennellii HOM05D000394 ORTHO05D000299 1.1e-06 57.8 107 35.5
Migut.C00758 Erythranthe guttata HOM05D000394 ORTHO05D000299 2.4e-06 56.6 106 30.2
PGSC0003DMG401003745 Solanum tuberosum HOM05D000394 ORTHO05D000299 2.4e-06 56.6 107 35.5
ClCG11G004200 Citrullus lanatus HOM05D000394 ORTHO05D000299 9.2e-06 54.7 69 39.1
MELO3C023317.2 Cucumis melo HOM05D000394 ORTHO05D000299 9.2e-06 54.7 69 39.1
CsaV3_2G014970 Cucumis sativus L. HOM05D000394 ORTHO05D000299 9.2e-06 54.7 69 39.1
Sed0025967 Sechium edule HOM05D000394 ORTHO05D000299 9.2e-06 54.7 69 39.1


User provided reference genes

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