Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.8e-162 575.9 294 100.0
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.2e-108 397.1 291 71.8
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.9e-105 384.8 291 69.4
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 5.0e-104 381.7 291 69.1
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.8e-77 293.5 230 63.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.5e-76 290.4 205 70.2
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 5.8e-76 288.5 211 68.2
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.7e-75 287.0 188 73.9
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 2.2e-75 286.6 207 69.1
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.9e-75 286.2 188 73.4
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 4.9e-75 285.4 202 70.3
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 8.4e-75 284.6 186 72.0
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.1e-74 284.3 203 67.5
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.1e-74 284.3 188 74.5
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.4e-74 283.1 188 73.9
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.4e-74 283.1 267 57.3
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 4.1e-74 282.3 204 68.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 4.1e-74 282.3 204 68.6
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 4.1e-74 282.3 211 65.4
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 5.4e-74 282.0 203 67.5
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 5.4e-74 282.0 203 68.0
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 9.2e-74 281.2 186 73.1
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.2e-73 280.8 191 72.8
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.6e-73 280.4 186 73.7
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.1e-73 280.0 212 67.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.1e-73 280.0 188 70.7
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 3.5e-73 279.3 250 56.8
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 4.6e-73 278.9 284 54.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 4.6e-73 278.9 203 69.0
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 6.0e-73 278.5 193 70.5
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 6.0e-73 278.5 202 66.8
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 7.8e-73 278.1 192 70.3
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.3e-72 277.3 258 57.0
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.7e-72 276.9 290 53.8
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.7e-72 276.9 194 69.1
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 3.0e-72 276.2 188 71.8
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 5.1e-72 275.4 215 66.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 5.1e-72 275.4 215 66.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 5.1e-72 275.4 217 65.0
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 8.6e-72 274.6 264 55.3
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 8.6e-72 274.6 186 72.0
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.1e-71 274.2 203 67.0
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.1e-71 274.2 188 71.8
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.5e-71 273.9 184 70.1
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.5e-71 273.9 184 70.1
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.5e-71 273.9 202 66.8
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.5e-71 273.9 203 65.5
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.9e-71 273.5 188 70.7
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.9e-71 273.5 188 70.7
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.9e-71 273.5 188 70.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.9e-71 273.5 203 65.5
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 4.3e-71 272.3 203 65.5
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.6e-71 271.9 203 67.5
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 7.3e-71 271.6 212 66.0
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 9.6e-71 271.2 201 67.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.2e-70 270.8 208 64.4
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.1e-70 270.0 203 65.0
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.1e-70 270.0 204 65.7
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 3.6e-70 269.2 186 72.0
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 3.6e-70 269.2 212 62.7
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 3.6e-70 269.2 202 66.8
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.2e-70 268.5 222 63.1
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 6.2e-70 268.5 187 69.5
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.8e-69 266.9 270 53.7
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 5.2e-69 265.4 258 56.2
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 5.2e-69 265.4 189 67.2
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 6.9e-69 265.0 200 66.5
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.5e-68 263.8 194 66.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.0e-68 263.5 192 65.1
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 2.0e-68 263.5 302 49.7
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 2.6e-68 263.1 184 69.0
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 3.4e-68 262.7 193 66.8
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.4e-68 262.3 187 67.4
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 5.8e-68 261.9 203 62.6
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 7.6e-68 261.5 199 66.8
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 9.9e-68 261.2 194 67.5
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.7e-67 260.4 167 70.7
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.7e-67 260.4 187 66.8
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.2e-67 260.0 193 66.8
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 3.8e-67 259.2 183 67.2
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 6.4e-67 258.5 187 70.1
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.4e-67 258.5 188 68.6
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.4e-66 257.3 204 64.2
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 1.9e-66 256.9 187 70.1
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.4e-66 256.5 183 66.7
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 5.4e-66 255.4 173 71.7
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 2.1e-65 253.4 213 61.0
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.1e-65 253.4 190 66.8
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.7e-65 253.1 208 59.6
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 3.5e-65 252.7 228 55.3
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 6.0e-65 251.9 263 52.1
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 7.8e-65 251.5 185 67.6
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 2.3e-64 250.0 188 66.5
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 3.0e-64 249.6 174 71.3
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 3.9e-64 249.2 184 66.3
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 8.7e-64 248.1 228 55.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.7e-64 248.1 228 55.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-63 247.7 228 55.3
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.5e-63 247.3 222 57.7
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.9e-63 246.9 203 63.1
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.9e-63 246.9 240 55.4
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 2.5e-63 246.5 180 68.3
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.3e-63 246.1 193 62.2
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.3e-63 246.1 237 57.8
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 9.6e-63 244.6 203 63.5
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.3e-62 244.2 196 65.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.3e-62 244.2 218 56.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.4e-61 240.7 168 69.0
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 3.1e-61 239.6 198 60.1
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.8e-59 232.6 308 45.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.9e-58 230.3 184 60.3
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 8.7e-56 221.5 160 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 3.3e-55 219.5 160 65.6
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 2.8e-54 216.5 247 51.4
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 3.1e-53 213.0 177 56.5
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.0e-52 210.3 158 68.4
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 1.7e-51 207.2 165 66.1
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 9.3e-50 201.4 161 62.7
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.1e-49 200.3 133 69.9
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.0e-48 198.0 157 65.6
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.8e-48 197.2 134 72.4
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 4.0e-45 186.0 157 63.7
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.8e-40 170.6 108 71.3
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 2.5e-39 166.8 117 66.7
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.5e-31 141.0 92 69.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.8e-30 136.7 188 41.5
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-28 131.0 223 39.5
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 1.3e-27 127.9 216 36.1
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.2e-27 127.1 128 57.8
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 8.5e-27 125.2 137 46.0
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.4e-26 124.4 133 46.6
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 2.1e-25 120.6 92 59.8
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 7.9e-25 118.6 100 61.0
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 3.0e-24 116.7 79 74.7
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.3e-22 111.3 115 53.9
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.3e-22 111.3 115 53.9
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 4.1e-21 106.3 77 71.4
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.5e-15 87.8 111 50.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.6e-12 77.0 173 33.5
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 6.5e-11 72.4 43 72.1
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 6.1e-09 65.9 38 76.3
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 7.5e-07 58.9 58 55.2


User provided reference genes

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