Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 0.0e+00 1892.1 977 100.0
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 0.0e+00 1426.0 1043 74.6
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 0.0e+00 1374.8 1012 74.6
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 0.0e+00 1252.3 1075 65.2
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 0.0e+00 1136.7 984 62.9
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 1.5e-309 1066.2 1046 58.2
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 3.3e-309 1065.1 1048 56.5
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 6.8e-307 1057.4 1066 55.9
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 1.5e-301 1039.6 1042 56.0
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 1.4e-299 1033.1 1046 56.1
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 3.4e-298 1028.5 1047 56.1
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 7.6e-298 1027.3 1044 56.3
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 2.9e-297 1025.4 1047 56.6
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 2.7e-295 1018.8 1046 56.1
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 7.8e-295 1017.3 1050 57.1
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.3e-294 1016.5 1048 55.7
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 1.3e-292 1010.0 1048 55.2
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.6e-292 1009.6 1047 55.5
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.1e-291 1006.9 984 56.8
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 1.1e-291 1006.9 1048 55.0
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 3.1e-291 1005.4 1044 55.9
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 4.0e-291 1005.0 1052 54.9
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 6.9e-291 1004.2 1049 55.5
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 7.1e-288 994.2 1049 54.1
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 1.2e-287 993.4 1042 54.3
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 1.6e-287 993.0 1048 54.9
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 2.7e-287 992.3 1044 53.9
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 7.9e-287 990.7 1047 54.6
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 5.1e-286 988.0 1045 54.8
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 6.6e-286 987.6 1048 55.0
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 6.6e-286 987.6 1069 53.3
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 1.1e-285 986.9 1047 54.6
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 3.3e-285 985.3 1045 54.2
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 9.6e-285 983.8 1043 53.9
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 6.2e-284 981.1 1045 53.8
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 8.1e-284 980.7 1070 54.4
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 9.0e-283 977.2 1066 53.1
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 1.2e-282 976.9 991 54.9
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 4.2e-280 968.4 1074 53.2
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 9.3e-280 967.2 1045 54.0
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 2.1e-279 966.1 1044 52.3
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 7.9e-279 964.1 1049 53.2
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 1.8e-278 963.0 1045 52.7
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 3.0e-278 962.2 1044 53.0
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 6.7e-278 961.1 1045 53.1
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 1.1e-277 960.3 1044 54.0
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 1.9e-277 959.5 1045 53.1
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 2.5e-277 959.1 1068 52.9
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 1.3e-276 956.8 1064 52.1
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 1.4e-275 953.4 1051 53.9
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 2.4e-275 952.6 1043 52.5
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 5.8e-274 948.0 1047 53.9
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 1.0e-273 947.2 1047 52.4
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 1.3e-273 946.8 1044 53.4
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 7.1e-272 941.0 1047 53.0
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 1.6e-271 939.9 1046 52.7
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 2.7e-271 939.1 1048 51.9
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 5.1e-270 934.9 1046 52.4
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 1.9e-269 932.9 1051 51.9
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 5.7e-269 931.4 1051 51.8
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 1.3e-268 930.2 1044 51.7
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 2.8e-268 929.1 1069 52.4
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 8.2e-268 927.5 1044 52.4
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.1e-267 927.2 1046 52.8
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 1.5e-266 923.3 1046 51.5
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 7.6e-266 921.0 1048 50.3
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 8.4e-265 917.5 952 56.3
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 1.1e-264 917.1 1049 52.4
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 1.4e-264 916.8 1050 52.0
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 1.2e-263 913.7 1048 52.1
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 2.2e-260 902.9 1044 51.6
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 1.7e-257 893.3 1277 44.5
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 1.0e-254 884.0 1024 50.9
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 3.7e-252 875.5 960 54.2
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 5.3e-251 871.7 1067 50.9
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 9.1e-251 870.9 897 55.5
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 3.0e-246 855.9 900 56.2
Cpa.g.sc8.88 Carica papaya HOM05D006091 ORTHO05D006421 1.0e-241 840.9 1245 44.2
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 1.4e-238 830.5 933 52.6
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 8.2e-236 821.2 1003 48.2
Glyma.16G084200 Glycine max HOM05D006091 ORTHO05D006421 2.3e-230 803.1 883 53.7
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 7.2e-224 781.6 1053 47.0
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 2.6e-221 773.1 976 47.5
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 2.8e-220 769.6 1066 46.1
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 1.8e-211 740.3 830 51.4
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 7.3e-208 728.4 955 45.9
CAN.G99.2 Capsicum annuum HOM05D006091 ORTHO05D006421 2.1e-191 673.7 682 55.6
SEGI_05193 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 6.0e-186 655.6 1040 41.3
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 3.9e-185 652.9 1010 42.3
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 1.0e-177 628.2 1041 39.7
EL10Ac7g17981 Beta vulgaris HOM05D006091 ORTHO05D006421 1.1e-174 618.2 493 67.7
Pp3c23_8470 Physcomitrium patens HOM05D006091 ORTHO05D006421 2.0e-165 587.4 1069 38.3
TAR362G0288 Trochodendron aralioides HOM05D006091 ORTHO05D006421 1.3e-161 574.7 512 61.3
Hma1.2p1_0405F.1_g145830 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.0e-157 560.8 502 60.2
Hma1.2p1_2126F.1_g314575 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.0e-157 560.8 502 60.2
Hma1.2p1_0405F.1_g145840 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 7.9e-154 548.9 495 60.0
Hma1.2p1_2126F.1_g314577 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 7.9e-154 548.9 495 60.0
ClCG09G008430 Citrullus lanatus HOM05D006091 ORTHO05D006421 1.2e-149 535.0 510 57.1
CARHR082040 Cardamine hirsuta HOM05D006091 ORTHO05D006421 1.7e-148 531.2 517 56.7
GSVIVG01005280001 Vitis vinifera HOM05D006091 ORTHO05D006421 1.1e-142 511.9 425 61.9
GSVIVG01002194001 Vitis vinifera HOM05D006091 ORTHO05D006421 5.3e-134 483.0 552 53.4
Hma1.2p1_2027F.1_g311640 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 2.3e-129 467.6 544 52.6
TAR362G0363 Trochodendron aralioides HOM05D006091 ORTHO05D006421 3.9e-129 466.8 523 54.3
Haze_03314 Corylus avellana HOM05D006091 ORTHO05D006421 4.1e-126 456.8 500 52.6
Haze_03313 Corylus avellana HOM05D006091 ORTHO05D006421 1.0e-121 442.2 414 60.6
Os02g0481700 Oryza sativa ssp. japonica HOM05D006091 ORTHO05D006421 2.6e-120 437.6 519 51.4
CDE05G1549 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 4.0e-89 334.0 483 43.1
SEGI_30787 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 2.7e-85 321.2 468 46.2
CBR_g37499 Chara braunii HOM05D006091 ORTHO05D000002 3.8e-47 194.5 390 36.4
ECA246G1360 Erigeron canadensis HOM05D006091 ORTHO05D006421 6.9e-41 173.7 170 52.4
RcHm_v2.0_Chr6g0283341 Rosa chinensis HOM05D006091 ORTHO05D006421 6.0e-37 160.6 172 50.0
SEGI_39275 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 5.1e-36 157.5 249 41.4
vmacro06989 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 2.3e-28 132.1 113 57.5
CDE05G1763 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 3.9e-28 131.3 126 54.0
Sp7g12380 Schrenkiella parvula HOM05D002557 ORTHO05D002563 5.7e-27 127.5 125 51.2
CAN.G99.1 Capsicum annuum HOM05D006091 ORTHO05D006421 5.1e-20 104.4 98 55.1
MBI07_g21346_MAGBIO Magnolia biondii HOM05D006091 ORTHO05D006421 2.0e-19 102.4 91 59.3
BcaC05g29533 Brassica carinata HOM05D006091 ORTHO05D006421 2.8e-18 98.6 116 52.6
Eucgr.H00736 Eucalyptus grandis HOM05D006091 ORTHO05D006421 3.7e-18 98.2 94 51.1
CDE05G0609 Ceratophyllum demersum HOM05D006091 ORTHO05D006421 8.2e-18 97.1 59 84.7
BcaC05g29730 Brassica carinata HOM05D006091 ORTHO05D006421 1.8e-17 95.9 92 52.2
CBR_g54770 Chara braunii HOM05D006091 ORTHO05D006421 5.3e-17 94.4 188 34.0
Cre06.g275150 Chlamydomonas reinhardtii HOM05D006091 ORTHO05D006421 1.1e-11 76.6 226 29.2
SMO364G0811 Selaginella moellendorffii HOM05D011999 ORTHO05D006421 7.4e-11 73.9 198 32.3
MBI16_g37173_MAGBIO Magnolia biondii HOM05D006091 ORTHO05D006421 3.7e-10 71.6 47 66.0
BraA05t22811Z Brassica rapa HOM05D000328 ORTHO05D000191 2.4e-09 68.9 43 67.4
AUR62040616 Chenopodium quinoa HOM05D006091 ORTHO05D006421 4.1e-09 68.2 54 68.5
CBR_g37496 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-07 62.8 315 26.7
MCO04G344 Micromonas commoda HOM05D006091 ORTHO05D006421 1.7e-07 62.8 111 37.8
Cc08_g04910 Coffea canephora HOM05D006091 ORTHO05D006421 2.5e-06 58.9 39 64.1
PSO478G3557 Papaver somniferum HOM05D003218 ORTHO05D003702 9.4e-06 57.0 60 48.3


User provided reference genes

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