Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 9.4e-139 496.9 257 100.0
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.6e-82 310.1 267 59.6
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 6.2e-82 308.1 268 60.8
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 2.4e-78 296.2 252 59.1
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 1.4e-57 227.3 276 46.7
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 9.9e-56 221.1 246 49.6
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.7e-55 220.3 227 50.7
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 2.9e-55 219.5 252 46.8
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 6.4e-55 218.4 240 47.5
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 1.1e-54 217.6 227 50.2
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 4.6e-53 212.2 223 50.2
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 7.9e-53 211.5 258 46.5
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 3.0e-52 209.5 247 47.0
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 3.9e-52 209.1 260 48.5
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 8.7e-52 208.0 226 46.9
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 8.7e-52 208.0 234 49.6
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 7.4e-51 204.9 224 49.1
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 9.6e-51 204.5 149 64.4
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 1.6e-50 203.8 130 69.2
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 4.8e-50 202.2 130 70.8
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 8.1e-50 201.4 229 48.5
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 8.1e-50 201.4 243 46.1
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 1.1e-49 201.1 229 49.3
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 1.4e-49 200.7 178 59.0
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.4e-49 200.7 121 73.6
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 1.8e-49 200.3 121 74.4
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 1.8e-49 200.3 122 69.7
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 3.1e-49 199.5 254 44.9
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 9.0e-49 198.0 250 44.4
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.2e-48 197.6 230 45.7
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.2e-48 197.6 221 49.3
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 1.2e-48 197.6 250 45.6
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 2.0e-48 196.8 119 73.1
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 2.6e-48 196.4 230 50.0
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 2.6e-48 196.4 256 46.1
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 3.4e-48 196.1 229 46.7
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 3.4e-48 196.1 229 46.7
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 3.4e-48 196.1 229 46.7
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 4.5e-48 195.7 231 47.2
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 1.3e-47 194.1 217 51.6
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 2.2e-47 193.4 235 44.7
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 1.1e-46 191.0 221 47.5
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 7.1e-46 188.3 122 68.9
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 9.3e-46 188.0 243 43.2
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 1.2e-45 187.6 210 51.9
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 2.1e-45 186.8 117 72.6
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 2.1e-45 186.8 226 47.8
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 2.1e-45 186.8 248 44.4
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 3.5e-45 186.0 208 48.1
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 3.5e-45 186.0 140 62.1
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 7.9e-45 184.9 176 54.5
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 7.9e-45 184.9 250 44.8
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 1.0e-44 184.5 176 55.1
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 1.0e-44 184.5 127 66.1
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 1.3e-44 184.1 250 42.4
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 1.3e-44 184.1 215 53.0
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 2.3e-44 183.3 226 45.6
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 3.0e-44 183.0 128 63.3
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 5.1e-44 182.2 118 68.6
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.1e-44 182.2 118 68.6
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.1e-43 181.0 243 45.3
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 1.9e-43 180.3 210 47.6
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 3.3e-43 179.5 139 60.4
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 3.3e-43 179.5 231 45.9
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 4.3e-43 179.1 246 45.1
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 7.4e-43 178.3 249 44.2
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 1.3e-42 177.6 243 42.8
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 1.3e-42 177.6 214 47.7
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 6.2e-42 175.3 218 47.2
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 8.2e-42 174.9 209 45.5
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 8.2e-42 174.9 210 46.7
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.1e-41 174.5 228 44.3
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 2.0e-40 170.2 156 55.1
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.0e-40 170.2 223 43.5
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 6.5e-39 165.2 235 46.4
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 1.9e-38 163.7 235 41.7
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 3.2e-38 162.9 233 40.3
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 1.6e-37 160.6 156 47.4
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 8.7e-36 154.8 148 51.4
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 7.4e-35 151.8 125 53.6
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 6.9e-33 145.2 174 46.6
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 6.9e-33 145.2 123 57.7
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 1.2e-32 144.4 254 39.0
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 4.5e-32 142.5 118 55.9
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 1.1e-30 137.9 214 42.1
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 1.4e-30 137.5 125 56.8
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 3.6e-29 132.9 132 47.0
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.8e-28 130.6 234 35.0
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 8.7e-28 128.3 119 50.4
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 6.3e-26 122.1 146 47.9
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 2.0e-24 117.1 122 45.1
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.9e-23 113.2 114 50.0
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 8.5e-23 111.7 221 34.4
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 1.4e-20 104.4 161 40.4
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.8e-10 70.1 46 63.0
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 3.1e-09 66.6 158 32.9
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 7.0e-09 65.5 156 34.0
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.0e-08 63.9 150 36.0
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 1.0e-07 61.6 35 71.4
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 3.8e-07 59.7 52 53.8


User provided reference genes

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