Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 3.5e-291 1004.2 503 100.0
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 8.3e-216 753.8 539 72.4
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 9.6e-196 687.2 484 72.7
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.9e-188 662.9 466 73.6
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.9e-159 566.6 532 58.5
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.8e-157 560.1 531 56.3
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 4.8e-155 552.0 534 53.9
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 4.1e-154 548.9 532 54.3
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 1.3e-152 543.9 532 53.6
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 6.5e-152 541.6 540 53.1
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 8.5e-152 541.2 533 53.8
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 1.8e-149 533.5 542 54.6
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 2.3e-149 533.1 527 52.9
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.3e-149 533.1 530 53.4
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 6.7e-149 531.6 533 53.5
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 6.7e-149 531.6 536 53.2
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 8.8e-149 531.2 533 53.8
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 2.6e-148 529.6 527 53.7
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 5.7e-148 528.5 533 53.3
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 9.7e-148 527.7 547 53.4
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 1.3e-147 527.3 533 53.1
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 1.7e-147 526.9 526 53.2
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.7e-147 526.9 540 53.5
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 2.8e-147 526.2 532 53.2
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 8.2e-147 524.6 546 52.6
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 1.1e-146 524.2 527 52.8
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 1.8e-146 523.5 542 53.5
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 3.1e-146 522.7 541 51.9
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 3.1e-146 522.7 529 52.9
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.5e-145 520.4 526 52.5
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 2.0e-145 520.0 543 52.7
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 4.5e-145 518.8 526 53.0
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 4.5e-145 518.8 526 53.0
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 4.5e-145 518.8 533 51.8
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 4.5e-145 518.8 547 52.5
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 4.5e-145 518.8 537 53.4
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 5.9e-145 518.5 530 53.2
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 7.7e-145 518.1 530 51.7
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 7.7e-145 518.1 533 52.2
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 1.0e-144 517.7 534 54.3
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.3e-144 517.3 533 52.7
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 1.3e-144 517.3 526 52.7
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 1.3e-144 517.3 524 53.2
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 1.3e-144 517.3 524 53.2
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 1.7e-144 516.9 527 52.6
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.7e-144 516.9 535 51.2
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 2.2e-144 516.5 542 53.1
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.8e-144 515.8 534 52.1
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 4.2e-143 512.3 527 51.2
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.6e-142 510.4 533 52.0
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 1.6e-142 510.4 531 51.4
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 3.6e-142 509.2 538 51.5
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 4.7e-142 508.8 541 52.7
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 7.9e-142 508.1 527 50.9
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 3.0e-141 506.1 526 50.6
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.9e-141 505.8 482 54.4
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 5.7e-140 501.9 529 51.0
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 2.2e-139 500.0 538 50.9
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 2.2e-139 500.0 536 52.1
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 2.8e-139 499.6 491 53.8
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.1e-138 497.7 538 50.9
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 3.1e-138 496.1 638 45.6
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 2.0e-137 493.4 532 52.8
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.5e-137 492.7 532 52.6
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 1.0e-136 491.1 553 49.7
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 7.2e-135 485.0 504 51.6
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 1.0e-133 481.1 528 50.4
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 1.8e-133 480.3 536 50.6
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 4.0e-133 479.2 533 51.8
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 6.7e-133 478.4 570 48.1
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 8.8e-133 478.0 533 52.0
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 1.2e-132 477.6 532 48.7
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 2.0e-132 476.9 530 49.1
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 5.7e-132 475.3 537 50.1
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 6.3e-131 471.9 531 49.7
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 4.1e-130 469.2 534 49.1
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 9.1e-130 468.0 488 53.7
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 2.7e-129 466.5 531 49.9
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 2.1e-126 456.8 756 38.5
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.8e-123 445.7 532 50.2
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 9.1e-122 441.4 535 47.7
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 1.4e-117 427.6 520 47.7
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 1.2e-116 424.5 475 49.1
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 5.7e-116 422.2 474 50.0
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 2.8e-115 419.9 364 57.7
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.4e-114 417.5 441 49.9
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.6e-110 404.1 507 46.7
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 6.1e-110 402.1 521 45.5
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 1.5e-103 380.9 502 45.8
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.1e-101 374.8 535 42.6
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 2.9e-99 366.7 528 41.1
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.5e-95 354.4 531 39.4
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 5.4e-90 335.9 262 62.2
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.7e-88 330.9 256 62.5
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.1e-85 321.6 268 59.0
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 5.2e-85 319.3 465 43.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 7.3e-79 298.9 350 48.9
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 5.4e-74 282.7 534 34.6
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 2.0e-68 264.2 491 36.0
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.3e-64 251.5 202 58.9
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 6.2e-62 242.7 251 52.6
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 5.3e-61 239.6 251 53.0
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 2.9e-59 233.8 253 51.0
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.1e-58 229.2 248 52.4
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 4.6e-57 226.5 410 38.5
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 6.0e-57 226.1 182 59.3
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.4e-53 214.2 309 43.7
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.1e-50 205.3 252 47.2
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 8.7e-48 195.7 248 46.4
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 7.7e-44 182.6 206 50.0
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 3.8e-43 180.3 130 70.8
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 7.9e-41 172.6 250 40.8
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 3.5e-28 130.6 432 28.5
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.2e-26 124.0 121 49.6
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.2e-18 97.1 111 49.5
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 5.5e-18 96.7 488 24.4
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 4.1e-13 80.5 126 44.4
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 2.5e-10 71.2 123 39.0
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 2.5e-10 71.2 103 44.7
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 2.5e-10 71.2 103 44.7
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 7.5e-07 59.7 84 44.0
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.7e-06 58.5 36 63.9


User provided reference genes

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