Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g217320 Amaranthus hybridus HOM05D004080 ORTHO05D004855 1.0e-155 553.5 314 100.0
AUR62001413 Chenopodium quinoa HOM05D004080 ORTHO05D004855 1.3e-121 440.3 403 69.2
EL10Ac7g16485 Beta vulgaris HOM05D004080 ORTHO05D004855 2.2e-121 439.5 403 67.5
PGR102G0694 Punica granatum HOM05D004080 ORTHO05D004855 3.4e-114 415.6 403 60.8
MSTRG.22520 Avicennia marina HOM05D004080 ORTHO05D004855 5.7e-114 414.8 401 59.9
CAN.G1073.7 Capsicum annuum HOM05D004080 ORTHO05D004855 1.3e-113 413.7 403 60.5
PGSC0003DMG400028851 Solanum tuberosum HOM05D004080 ORTHO05D004855 2.8e-113 412.5 403 60.8
Lj9A537G36 Lonicera japonica HOM05D004080 ORTHO05D004855 1.4e-112 410.2 400 61.0
Sopen12g024050 Solanum pennellii HOM05D004080 ORTHO05D004855 1.8e-112 409.8 412 59.7
Gohir.D06G202300 Gossypium hirsutum HOM05D004080 ORTHO05D004855 5.4e-112 408.3 408 60.0
Gorai.010G236200 Gossypium raimondii HOM05D004080 ORTHO05D004855 5.4e-112 408.3 408 60.0
Gohir.A06G194600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 7.0e-112 407.9 408 60.3
Solyc12g049580.2 Solanum lycopersicum HOM05D004080 ORTHO05D004855 7.0e-112 407.9 416 58.9
Sopen12g024060 Solanum pennellii HOM05D004080 ORTHO05D004855 7.0e-112 407.9 412 59.5
Migut.D00915 Erythranthe guttata HOM05D004080 ORTHO05D004855 4.5e-111 405.2 401 58.6
SalBow6G1171 Salvia bowleyana HOM05D004080 ORTHO05D004855 4.5e-111 405.2 401 58.1
MD17G1153700 Malus domestica HOM05D004080 ORTHO05D004855 5.9e-111 404.8 404 58.9
Manes.11G013200 Manihot esculenta HOM05D004080 ORTHO05D004855 7.7e-111 404.4 403 60.5
CSS0029048 Camellia sinensis var. sinensis HOM05D004080 ORTHO05D004855 1.0e-110 404.1 402 60.0
MD09G1173400 Malus domestica HOM05D004080 ORTHO05D004855 1.0e-110 404.1 404 58.7
GSVIVG01016675001 Vitis vinifera HOM05D004080 ORTHO05D004855 1.0e-110 404.1 400 60.5
Hma1.2p1_0229F.1_g097040 Hydrangea macrophylla HOM05D004080 ORTHO05D004855 1.3e-110 403.7 403 60.5
Rhsim08G0244100 Rhododendron simsii HOM05D004080 ORTHO05D004855 2.2e-110 402.9 414 59.9
Cc04_g00780 Coffea canephora HOM05D004080 ORTHO05D004855 2.9e-110 402.5 402 59.2
Glyma.19G262500 Glycine max HOM05D004080 ORTHO05D004855 2.9e-110 402.5 355 64.2
RcHm_v2.0_Chr2g0147751 Rosa chinensis HOM05D004080 ORTHO05D004855 3.8e-110 402.1 408 59.6
Sabra01G0129400 Salix brachista HOM05D004080 ORTHO05D004855 3.8e-110 402.1 401 60.3
SGA_v2.0_scaffold4G02093 Striga asiatica HOM05D004080 ORTHO05D004855 3.8e-110 402.1 402 58.5
TWI23G0788 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 6.5e-110 401.4 403 59.6
TAR626G1035 Trochodendron aralioides HOM05D004080 ORTHO05D004855 1.9e-109 399.8 400 59.8
Prupe.3G031500 Prunus persica HOM05D004080 ORTHO05D004855 2.5e-109 399.4 400 58.8
DCAR_007657 Daucus carota HOM05D004080 ORTHO05D004855 3.2e-109 399.1 400 59.8
CANSAT56G1857 Cannabis sativa HOM05D004080 ORTHO05D004855 4.2e-109 398.7 402 58.5
MELO3C024310.2 Cucumis melo HOM05D004080 ORTHO05D004855 5.5e-109 398.3 402 59.0
Sc12g0010900 Simmondsia chinensis HOM05D004080 ORTHO05D004855 5.5e-109 398.3 391 61.1
vmacro15082 Vaccinium macrocarpon HOM05D004080 ORTHO05D004855 5.5e-109 398.3 438 61.0
ClCG09G001360 Citrullus lanatus HOM05D004080 ORTHO05D004855 9.4e-109 397.5 402 59.0
Potri.001G163300 Populus trichocarpa HOM05D004080 ORTHO05D004855 9.4e-109 397.5 401 59.9
Thecc.06G129400 Theobroma cacao HOM05D004080 ORTHO05D004855 1.2e-108 397.1 409 58.4
CsaV3_7G033970 Cucumis sativus L. HOM05D004080 ORTHO05D004855 2.1e-108 396.4 401 58.1
TAR383G0367 Trochodendron aralioides HOM05D004080 ORTHO05D004855 2.1e-108 396.4 405 59.5
TWI14G1096 Tripterygium wilfordii HOM05D004080 ORTHO05D004855 2.7e-108 396.0 401 58.9
Duzib235G0388 Durio zibethinus HOM05D004080 ORTHO05D004855 4.7e-108 395.2 410 60.5
Cpa.g.sc25.185 Carica papaya HOM05D004080 ORTHO05D004855 6.1e-108 394.8 409 58.4
Sed0028223 Sechium edule HOM05D004080 ORTHO05D004855 6.1e-108 394.8 402 58.7
FAN09G4052 Fragaria x ananassa HOM05D004080 ORTHO05D004855 8.0e-108 394.4 405 58.0
Potri.003G072100 Populus trichocarpa HOM05D004080 ORTHO05D004855 8.0e-108 394.4 401 58.9
THA.LOC104815600 Tarenaya hassleriana HOM05D004080 ORTHO05D004855 2.3e-107 392.9 404 57.2
Cfa003466 Carpinus fangiana HOM05D004080 ORTHO05D004855 3.0e-107 392.5 408 58.1
CiPaw.02G131500 Carya illinoinensis HOM05D004080 ORTHO05D004855 3.0e-107 392.5 402 59.2
Eucgr.J02599 Eucalyptus grandis HOM05D004080 ORTHO05D004855 3.0e-107 392.5 421 61.3
AT1G72340 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 4.0e-107 392.1 405 57.0
Carub.0002s1920 Capsella rubella HOM05D004080 ORTHO05D004855 4.0e-107 392.1 401 57.4
AL2G32020 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 5.2e-107 391.7 404 57.9
arahy.Tifrunner.gnm1.ann1.Z4XL8W Arachis hypogaea HOM05D004080 ORTHO05D004855 5.2e-107 391.7 400 60.0
Duzib192G0957 Durio zibethinus HOM05D004080 ORTHO05D004855 5.2e-107 391.7 407 58.5
Oeu013440.1 Olea europaea HOM05D004080 ORTHO05D004855 5.2e-107 391.7 403 56.6
FAN14G5022 Fragaria x ananassa HOM05D004080 ORTHO05D004855 6.8e-107 391.3 405 57.8
FAN02G3159 Fragaria x ananassa HOM05D004080 ORTHO05D004855 8.8e-107 391.0 405 57.8
Lj1g0023220 Lotus japonicus HOM05D004080 ORTHO05D004855 8.8e-107 391.0 399 57.4
FAN05G3978 Fragaria x ananassa HOM05D004080 ORTHO05D004855 1.2e-106 390.6 403 57.8
arahy.Tifrunner.gnm1.ann1.L3RKN8 Arachis hypogaea HOM05D004080 ORTHO05D004855 1.5e-106 390.2 400 58.5
Thhalv10018714m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 1.5e-106 390.2 403 58.1
Sabra03G0042900 Salix brachista HOM05D004080 ORTHO05D004855 2.6e-106 389.4 401 58.6
QL05p001373 Quercus lobata HOM05D004080 ORTHO05D004855 3.4e-106 389.0 409 57.0
Atru.chr1.4109 Acer truncatum HOM05D004080 ORTHO05D004855 7.5e-106 387.9 406 57.9
C06p46700 Brassica napus HOM05D004080 ORTHO05D004855 2.8e-105 386.0 401 57.1
BolC6t39715H Brassica oleracea HOM05D004080 ORTHO05D004855 2.8e-105 386.0 401 57.1
BraA07t31412Z Brassica rapa HOM05D004080 ORTHO05D004855 4.9e-105 385.2 401 56.4
Nn6g35722 Nelumbo nucifera HOM05D004080 ORTHO05D004855 8.3e-105 384.4 409 57.0
Ciclev10025790m.g Citrus clementina HOM05D004080 ORTHO05D004855 1.1e-104 384.0 401 59.1
Phvul.009G262000 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 1.1e-104 384.0 403 56.1
Gohir.D05G143600 Gossypium hirsutum HOM05D004080 ORTHO05D004855 1.4e-104 383.6 418 56.2
Lalb_Chr18g0044901 Lupinus albus HOM05D004080 ORTHO05D004855 1.4e-104 383.6 406 56.4
BcaC03g15371 Brassica carinata HOM05D004080 ORTHO05D004855 2.4e-104 382.9 399 56.6
C02p29850 Brassica napus HOM05D004080 ORTHO05D004855 2.4e-104 382.9 399 56.6
BolC2t09033H Brassica oleracea HOM05D004080 ORTHO05D004855 2.4e-104 382.9 399 56.9
SalBow7G2362 Salvia bowleyana HOM05D004080 ORTHO05D004855 2.4e-104 382.9 271 75.3
VMungo1309G1832 Vigna mungo HOM05D004080 ORTHO05D004855 2.4e-104 382.9 407 55.3
BcaC08g43566 Brassica carinata HOM05D004080 ORTHO05D004855 4.1e-104 382.1 399 55.4
A07p38520 Brassica napus HOM05D004080 ORTHO05D004855 4.1e-104 382.1 401 56.1
C06p09640 Brassica napus HOM05D004080 ORTHO05D004855 4.1e-104 382.1 399 55.4
BolC6t36036H Brassica oleracea HOM05D004080 ORTHO05D004855 4.1e-104 382.1 399 55.4
BraA02t06843Z Brassica rapa HOM05D004080 ORTHO05D004855 4.1e-104 382.1 400 57.5
BcaB03g14982 Brassica carinata HOM05D004080 ORTHO05D004855 5.4e-104 381.7 401 56.6
CARHR065250 Cardamine hirsuta HOM05D004080 ORTHO05D004855 9.1e-104 380.9 402 56.0
Aa31LG4G2700 Aethionema arabicum HOM05D001342 ORTHO05D004855 1.2e-103 380.6 403 56.1
A02p17960 Brassica napus HOM05D004080 ORTHO05D004855 1.2e-103 380.6 399 57.1
Glyma.03G263500 Glycine max HOM05D004080 ORTHO05D004855 1.2e-103 380.6 402 56.2
Sp5g27430 Schrenkiella parvula HOM05D004080 ORTHO05D004855 1.6e-103 380.2 403 56.6
Carub.0001s4316 Capsella rubella HOM05D004080 ORTHO05D004855 2.0e-103 379.8 399 55.6
Sp1g40370 Schrenkiella parvula HOM05D004080 ORTHO05D004855 2.7e-103 379.4 353 61.5
Lsat_1_v5_gn_4_92141 Lactuca sativa HOM05D004080 ORTHO05D004855 1.0e-102 377.5 432 54.2
Haze_16125 Corylus avellana HOM05D004080 ORTHO05D004855 2.3e-102 376.3 444 53.4
Lsat_1_v5_gn_1_39161 Lactuca sativa HOM05D004080 ORTHO05D004855 2.9e-102 375.9 408 56.1
Gorai.009G147500 Gossypium raimondii HOM05D004080 ORTHO05D004855 3.8e-102 375.6 417 55.4
AUR62025622 Chenopodium quinoa HOM05D004080 ORTHO05D004855 6.6e-102 374.8 362 61.6
Thhalv10011350m.g Eutrema salsugineum HOM05D004080 ORTHO05D004855 1.1e-101 374.0 399 56.4
AL1G62590 Arabidopsis lyrata HOM05D004080 ORTHO05D004855 7.2e-101 371.3 399 55.1
BcaB05g24748 Brassica carinata HOM05D004080 ORTHO05D004855 9.5e-101 370.9 348 61.2
AT1G53880 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 2.1e-100 369.8 399 54.6
AT1G53900 Arabidopsis thaliana HOM05D004080 ORTHO05D004855 2.1e-100 369.8 399 54.6
COL.COLO4_30858 Corchorus olitorius HOM05D004080 ORTHO05D004855 6.1e-100 368.2 371 59.8
A06p00710 Brassica napus HOM05D004080 ORTHO05D004855 1.8e-99 366.7 403 53.3
arahy.Tifrunner.gnm1.ann1.E9FGF4 Arachis hypogaea HOM05D004080 ORTHO05D004855 4.0e-99 365.5 358 58.9
PSO135G0363 Papaver somniferum HOM05D004080 ORTHO05D004855 6.8e-99 364.8 401 54.6
arahy.Tifrunner.gnm1.ann1.I2K3PU Arachis hypogaea HOM05D004080 ORTHO05D004855 1.2e-98 364.0 358 58.7
PSO724G0358 Papaver somniferum HOM05D004080 ORTHO05D004855 1.2e-98 364.0 401 54.6
CARHR044200 Cardamine hirsuta HOM05D004080 ORTHO05D004855 1.5e-98 363.6 399 54.4
Aa31LG10G1450 Aethionema arabicum HOM05D004080 ORTHO05D004855 2.6e-98 362.8 400 54.5
BolC6t36718H Brassica oleracea HOM05D004080 ORTHO05D004855 2.6e-98 362.8 400 54.0
Lalb_Chr17g0343291 Lupinus albus HOM05D004080 ORTHO05D004855 9.8e-98 360.9 349 59.6
SGA_v2.0_scaffold71G23916 Striga asiatica HOM05D004080 ORTHO05D004855 1.1e-96 357.5 389 56.0
Ca_23429_v3 Cicer arietinum L. HOM05D004080 ORTHO05D004855 1.4e-96 357.1 358 58.4
Medtr8g023040 Medicago truncatula HOM05D004080 ORTHO05D004855 2.0e-95 353.2 351 57.5
Glyma.07G045300 Glycine max HOM05D004080 ORTHO05D004855 2.7e-95 352.8 351 57.5
Psat4g165760 Pisum sativum HOM05D004080 ORTHO05D004855 3.5e-95 352.4 351 57.8
TPR.G18158 Trifolium pratense HOM05D004080 ORTHO05D004855 1.9e-93 346.7 361 56.5
Phvul.010G123700 Phaseolus vulgaris HOM05D004080 ORTHO05D004855 5.6e-93 345.1 351 56.7
BcaC08g44141 Brassica carinata HOM05D004080 ORTHO05D004855 1.2e-92 344.0 399 53.6
CDE09G1267 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 2.3e-91 339.7 280 65.7
Lj3g0001023 Lotus japonicus HOM05D004080 ORTHO05D004855 3.1e-91 339.3 351 56.4
Aqoxy7G04172 Aquilegia oxysepala HOM05D004080 ORTHO05D004855 6.8e-91 338.2 341 59.2
BcaB07g33281 Brassica carinata HOM05D004080 ORTHO05D004855 7.5e-90 334.7 372 54.0
Nitab4.5_0008798g0030 Nicotiana tabacum HOM05D004080 ORTHO05D004855 9.8e-90 334.3 319 62.1
Peaxi162Scf00038g02253 Petunia axillaris HOM05D004080 ORTHO05D004855 9.8e-90 334.3 317 62.8
ATR0099G064 Amborella trichopoda HOM05D004080 ORTHO05D004855 1.6e-87 327.0 410 51.0
Zm00001eb138200 Zea mays HOM05D004080 ORTHO05D004855 3.0e-86 322.8 365 53.2
Nitab4.5_0003981g0090 Nicotiana tabacum HOM05D004080 ORTHO05D004855 1.1e-85 320.9 250 70.8
ECA247G2052 Erigeron canadensis HOM05D004080 ORTHO05D004855 7.3e-85 318.2 329 56.8
Nitab4.5_0000357g0150 Nicotiana tabacum HOM05D004080 ORTHO05D004855 9.5e-85 317.8 247 72.1
Os12g0497400 Oryza sativa ssp. japonica HOM05D004080 ORTHO05D004855 1.1e-83 314.3 359 52.6
Oeu006748.1 Olea europaea HOM05D004080 ORTHO05D004855 7.5e-82 308.1 399 50.6
FvH4_6g35750 Fragaria vesca HOM05D004080 ORTHO05D004855 2.2e-81 306.6 251 69.3
Nitab4.5_0004589g0010 Nicotiana tabacum HOM05D004080 ORTHO05D004855 6.0e-71 271.9 209 72.7
BcaB02g10878 Brassica carinata HOM05D004080 ORTHO05D004855 2.3e-70 270.0 262 58.0
Dinv37823 Davidia involucrata HOM05D004080 ORTHO05D004855 3.0e-70 269.6 224 69.2
Pp3c5_19430 Physcomitrium patens HOM05D004080 ORTHO05D004855 4.7e-68 262.3 342 47.4
Pp3c16_17800 Physcomitrium patens HOM05D004080 ORTHO05D004855 8.1e-68 261.5 342 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1526 Anthoceros agrestis HOM05D004080 ORTHO05D004855 8.9e-67 258.1 369 44.2
Pp3c3_36280 Physcomitrium patens HOM05D004080 ORTHO05D004855 1.5e-66 257.3 336 47.0
Mapoly0002s0094 Marchantia polymorpha HOM05D004080 ORTHO05D004855 2.0e-66 256.9 373 44.5
HPP92_011073 Vanilla planifolia HOM05D004080 ORTHO05D004855 8.1e-60 235.0 248 54.8
SMO203G0081 Selaginella moellendorffii HOM05D004080 ORTHO05D004855 2.4e-59 233.4 304 47.4
Gohir.A05G141401 Gossypium hirsutum HOM05D004080 ORTHO05D004855 1.6e-52 210.7 165 72.7
BcaC08g46690 Brassica carinata HOM05D004080 ORTHO05D004855 6.2e-52 208.8 251 54.6
Actinidia24431 Actinidia chinensis HOM05D004080 ORTHO05D004855 8.1e-52 208.4 219 58.0
Oeu015474.1 Olea europaea HOM05D004080 ORTHO05D004855 9.9e-50 201.4 221 52.0
CDE09G0018 Ceratophyllum demersum HOM05D004080 ORTHO05D004855 4.0e-43 179.5 139 67.6
Cre16.g687518 Chlamydomonas reinhardtii HOM05D004080 ORTHO05D004855 2.5e-37 160.2 323 34.7
MBI13_g01689_MAGBIO Magnolia biondii HOM05D004080 ORTHO05D004855 4.8e-36 156.0 135 64.4
Oeu033128.1 Olea europaea HOM05D004080 ORTHO05D004855 3.4e-34 149.8 153 57.5
PRCOL_00001985 Prasinoderma coloniale HOM05D004080 ORTHO05D004855 7.6e-34 148.7 284 36.6
Gorai.012G178400 Gossypium raimondii HOM05D004080 ORTHO05D004855 2.9e-33 146.7 81 91.4
HPP92_011050 Vanilla planifolia HOM05D004080 ORTHO05D004855 1.1e-32 144.8 174 52.9
SEGI_17135 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 2.2e-28 130.6 252 38.1
Atru.chr10.1447 Acer truncatum HOM05D004080 ORTHO05D004855 5.3e-27 125.9 84 72.6
MBI13_g01688_MAGBIO Magnolia biondii HOM05D004080 ORTHO05D004855 6.9e-27 125.6 69 88.4
Actinidia24432 Actinidia chinensis HOM05D004080 ORTHO05D004855 1.9e-24 117.5 73 80.8
SEGI_15203 Sequoiadendron giganteum HOM05D004080 ORTHO05D004855 1.8e-19 100.9 103 57.3
Atru.chr4.1739 Acer truncatum HOM05D004080 ORTHO05D004855 7.7e-18 95.5 55 81.8
Dinv17514 Davidia involucrata HOM05D004080 ORTHO05D004855 2.2e-17 94.0 91 61.5
TAR629G1052 Trochodendron aralioides HOM05D004080 ORTHO05D004855 3.2e-16 90.1 58 74.1
Nn6g35716 Nelumbo nucifera HOM05D004080 ORTHO05D004855 1.7e-12 77.8 58 65.5
BcaB07g33278 Brassica carinata HOM05D004080 ORTHO05D004855 5.0e-09 66.2 46 69.6
Lsat_1_v5_gn_5_160641 Lactuca sativa HOM05D004080 ORTHO05D004855 1.0e-06 58.5 43 60.5


User provided reference genes

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