Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1912.9 996 100.0
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1637.5 1001 85.0
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1522.7 993 79.1
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1477.2 994 76.0
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1465.3 992 75.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1462.6 970 77.3
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1458.7 993 74.6
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1457.2 993 74.7
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1456.8 992 75.5
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1456.4 971 79.4
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1451.0 992 75.1
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1448.0 992 74.0
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1448.0 992 75.3
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1444.9 982 74.3
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1444.1 982 74.5
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1441.0 989 74.1
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1437.9 995 74.2
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1436.0 994 74.1
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1434.5 993 73.7
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1433.3 989 73.5
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1432.2 992 74.0
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1429.5 994 73.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1428.7 992 73.8
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1428.7 992 74.4
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1428.7 992 73.7
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 992 74.1
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 992 73.2
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1427.2 992 74.5
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1426.8 992 74.8
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1426.0 966 74.5
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1424.8 993 73.9
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1421.8 1006 73.3
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1417.9 993 73.3
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1417.9 1017 73.2
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1415.6 1076 69.0
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1413.7 914 80.5
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1410.2 992 73.2
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1407.9 994 72.8
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1406.0 992 73.2
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 992 71.6
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1401.0 995 73.0
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1400.2 992 72.7
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1399.8 996 71.9
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 992 72.3
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 992 72.6
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 992 73.2
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1399.0 987 72.4
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1397.9 993 72.4
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1395.9 993 72.3
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1393.6 992 72.3
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1389.8 992 71.8
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1389.4 992 72.8
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1387.5 992 71.6
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1385.5 993 71.9
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1384.0 994 72.0
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1383.6 994 71.7
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1382.9 993 71.4
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1377.1 993 71.5
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1367.1 992 70.1
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1367.1 992 71.1
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1366.3 993 70.1
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1366.3 992 69.9
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1362.4 994 70.5
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1361.3 992 70.1
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1360.9 962 71.6
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1360.5 992 69.6
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1357.8 989 71.8
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1355.1 993 71.0
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1354.3 962 73.1
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1354.3 992 69.5
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1353.2 992 70.1
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1353.2 999 71.0
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1351.3 964 71.7
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1348.6 992 68.9
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1343.2 964 72.2
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1337.8 992 68.4
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1334.7 996 68.5
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1331.6 992 68.1
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1327.0 993 69.3
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1316.2 1005 68.2
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1315.8 896 74.6
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1314.7 994 69.2
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1313.5 992 67.3
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1313.1 982 69.8
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1313.1 982 69.8
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1308.1 992 67.7
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1303.1 999 71.1
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1298.5 995 68.8
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1294.3 995 67.8
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1291.2 936 71.3
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1289.2 993 68.4
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1286.2 993 66.7
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1283.9 988 68.0
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1282.3 996 67.0
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1281.5 994 66.7
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1277.3 994 66.3
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1275.8 994 66.3
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1272.3 1026 65.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1270.4 992 67.1
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1227.2 972 64.6
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1192.6 864 72.1
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1166.4 993 60.3
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1165.2 914 67.7
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 1.6e-295 1019.6 724 72.2
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.4e-294 1016.5 911 60.8
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 2.9e-289 998.8 994 53.5
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 4.1e-275 951.8 1003 51.5
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 8.6e-273 944.1 1001 49.5
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 1.5e-272 943.3 1003 51.3
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.2e-271 940.3 1002 51.4
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 2.9e-268 929.1 1000 49.1
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 3.7e-260 902.1 838 58.7
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 5.4e-259 898.3 611 74.8
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.6e-255 886.7 598 75.3
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 8.7e-249 864.4 743 60.7
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.3e-241 840.5 985 46.5
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 5.1e-241 838.6 809 54.1
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 6.6e-241 838.2 609 70.1
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 7.7e-213 745.0 912 44.8
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 2.2e-207 726.9 1085 38.5
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 3.8e-172 609.8 429 72.5
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 3.4e-136 490.3 355 69.9
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 2.1e-133 481.1 314 76.8
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 6.6e-132 476.1 304 77.6
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 3.4e-112 410.6 1098 29.9
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-89 335.9 275 64.0
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-89 335.9 275 64.0
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 2.9e-71 274.6 1103 25.7
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 3.4e-51 208.0 241 46.9
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 4.7e-37 161.0 945 22.8
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 8.1e-29 133.7 141 48.9
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.6e-27 128.6 116 66.4
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 7.6e-27 127.1 111 61.3
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.3e-26 126.3 140 47.9
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.3e-23 116.3 85 63.5
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 7.3e-14 84.0 64 68.8
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 1.9e-06 59.3 45 71.1
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 1.9e-06 59.3 45 71.1


User provided reference genes

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