Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g214420 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.1e-93 346.7 182 100.0
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 2.1e-28 129.8 104 70.2
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 1.2e-18 97.4 65 75.4
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 5.4e-16 88.6 60 75.0
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 5.4e-16 88.6 60 75.0
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 1.6e-15 87.0 60 73.3
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 3.5e-15 85.9 103 52.4
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 1.5e-13 80.5 92 53.3
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 7.4e-13 78.2 62 64.5
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 1.3e-12 77.4 71 59.2
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 1.1e-11 74.3 75 54.7
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 1.4e-11 73.9 76 56.6
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 1.4e-11 73.9 67 61.2
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 1.8e-11 73.6 100 48.0
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 3.1e-11 72.8 98 49.0
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 3.1e-11 72.8 101 46.5
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 3.1e-11 72.8 62 62.9
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 4.0e-11 72.4 89 51.7
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 5.3e-11 72.0 61 62.3
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 6.9e-11 71.6 58 65.5
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 6.9e-11 71.6 95 49.5
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 6.9e-11 71.6 65 58.5
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 9.0e-11 71.2 96 51.0
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 9.0e-11 71.2 96 51.0
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 1.2e-10 70.9 62 59.7
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 1.2e-10 70.9 62 61.3
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 1.2e-10 70.9 62 59.7
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 2.0e-10 70.1 62 59.7
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 2.6e-10 69.7 70 57.1
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 3.4e-10 69.3 58 63.8
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 3.4e-10 69.3 64 60.9
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.4e-10 69.3 76 55.3
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 4.5e-10 68.9 76 55.3
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 4.5e-10 68.9 76 55.3
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 4.5e-10 68.9 65 61.5
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 5.8e-10 68.6 49 71.4
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 5.8e-10 68.6 57 63.2
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 7.6e-10 68.2 59 64.4
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 9.9e-10 67.8 52 67.3
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 9.9e-10 67.8 46 73.9
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 1.3e-09 67.4 46 71.7
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 1.3e-09 67.4 63 60.3
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 1.3e-09 67.4 49 71.4
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.7e-09 67.0 62 62.9
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 1.7e-09 67.0 62 62.9
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 2.2e-09 66.6 52 67.3
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.2e-09 66.6 52 67.3
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.2e-09 66.6 52 67.3
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.2e-09 66.6 52 67.3
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 2.2e-09 66.6 61 60.7
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 2.2e-09 66.6 83 50.6
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.2e-09 66.6 70 52.9
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 2.9e-09 66.2 49 71.4
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 2.9e-09 66.2 49 71.4
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 2.9e-09 66.2 49 71.4
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 3.8e-09 65.9 57 63.2
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.8e-09 65.9 51 68.6
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 3.8e-09 65.9 56 62.5
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 3.8e-09 65.9 46 73.9
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 3.8e-09 65.9 60 60.0
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 3.8e-09 65.9 58 60.3
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 4.9e-09 65.5 57 63.2
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 4.9e-09 65.5 49 69.4
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 4.9e-09 65.5 60 60.0
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 4.9e-09 65.5 73 52.1
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 4.9e-09 65.5 60 61.7
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 4.9e-09 65.5 83 49.4
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 6.4e-09 65.1 59 62.7
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 6.4e-09 65.1 78 51.3
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 6.4e-09 65.1 59 64.4
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 1.1e-08 64.3 59 64.4
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 1.1e-08 64.3 49 67.3
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.1e-08 64.3 49 69.4
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.1e-08 64.3 49 69.4
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 1.1e-08 64.3 65 60.0
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 1.1e-08 64.3 64 59.4
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 1.1e-08 64.3 54 63.0
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 1.1e-08 64.3 51 64.7
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 1.4e-08 63.9 67 53.7
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 1.4e-08 63.9 81 50.6
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 1.4e-08 63.9 78 52.6
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 1.4e-08 63.9 78 52.6
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 1.4e-08 63.9 60 60.0
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 1.9e-08 63.5 49 65.3
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 1.9e-08 63.5 49 65.3
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 1.9e-08 63.5 49 65.3
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 1.9e-08 63.5 49 65.3
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 1.9e-08 63.5 49 65.3
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 1.9e-08 63.5 67 53.7
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 1.9e-08 63.5 62 61.3
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 2.4e-08 63.2 49 67.3
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 2.4e-08 63.2 49 65.3
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 4.2e-08 62.4 51 62.7
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 4.2e-08 62.4 63 54.0
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 5.5e-08 62.0 60 58.3
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 5.5e-08 62.0 46 69.6
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 7.1e-08 61.6 58 60.3
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 9.3e-08 61.2 44 68.2
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 9.3e-08 61.2 49 63.3
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.2e-07 60.8 63 55.6
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 1.2e-07 60.8 60 56.7
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.6e-07 60.5 103 42.7
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 2.1e-07 60.1 43 69.8
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 2.1e-07 60.1 45 68.9
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 3.5e-07 59.3 58 56.9
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 3.5e-07 59.3 56 55.4
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 6.0e-07 58.5 67 50.7
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 6.0e-07 58.5 78 47.4
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 7.9e-07 58.2 49 61.2
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 7.9e-07 58.2 44 68.2
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 1.3e-06 57.4 49 61.2
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 1.8e-06 57.0 44 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 3.9e-06 55.8 59 47.5


User provided reference genes

Program Settings