Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 8.7e-100 367.1 200 100.0
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.7e-58 229.9 215 66.0
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 1.4e-49 200.3 212 59.4
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 6.4e-34 148.3 146 61.0
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 3.0e-31 139.4 136 62.5
Ah.08g214000 Amaranthus hybridus HOM05D005884 ORTHO05D007282 1.5e-27 127.1 70 94.3
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 2.4e-25 119.8 191 46.1
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 3.2e-25 119.4 126 59.5
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 4.1e-25 119.0 159 50.9
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 4.1e-25 119.0 182 46.2
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 5.4e-25 118.6 113 63.7
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 5.4e-25 118.6 98 66.3
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 5.4e-25 118.6 126 57.9
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 7.0e-25 118.2 135 52.6
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 7.0e-25 118.2 130 57.7
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 7.0e-25 118.2 129 55.8
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 7.0e-25 118.2 105 65.7
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 9.2e-25 117.9 87 74.7
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 9.2e-25 117.9 172 46.5
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 9.2e-25 117.9 166 51.8
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 1.2e-24 117.5 133 58.6
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 1.2e-24 117.5 122 56.6
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.6e-24 117.1 166 50.6
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.6e-24 117.1 166 50.0
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 2.0e-24 116.7 133 54.1
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 2.7e-24 116.3 87 73.6
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 2.7e-24 116.3 173 46.8
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 2.7e-24 116.3 165 50.3
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 2.7e-24 116.3 124 58.1
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 3.5e-24 115.9 147 52.4
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.5e-24 115.9 169 50.3
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 3.5e-24 115.9 95 68.4
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 4.6e-24 115.5 136 49.3
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 4.6e-24 115.5 160 51.9
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 4.6e-24 115.5 121 57.9
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 4.6e-24 115.5 162 48.8
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 6.0e-24 115.2 192 46.4
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 6.0e-24 115.2 131 55.7
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 1.0e-23 114.4 151 51.0
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 1.0e-23 114.4 154 51.3
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.0e-23 114.4 101 63.4
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 1.3e-23 114.0 154 51.3
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 1.3e-23 114.0 102 62.7
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 1.3e-23 114.0 158 50.0
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 2.3e-23 113.2 152 49.3
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 2.3e-23 113.2 115 61.7
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 3.0e-23 112.8 139 54.0
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 3.0e-23 112.8 141 52.5
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 3.0e-23 112.8 164 48.2
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 3.9e-23 112.5 135 53.3
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 3.9e-23 112.5 158 48.7
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 3.9e-23 112.5 161 45.3
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 5.0e-23 112.1 135 52.6
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 5.0e-23 112.1 153 49.0
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 6.6e-23 111.7 179 46.9
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 8.6e-23 111.3 176 45.5
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 8.6e-23 111.3 188 43.6
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 8.6e-23 111.3 104 61.5
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 8.6e-23 111.3 166 48.2
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 1.1e-22 110.9 106 59.4
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.1e-22 110.9 187 44.9
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 1.1e-22 110.9 136 52.9
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 1.5e-22 110.5 180 46.1
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 1.5e-22 110.5 158 48.1
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 1.9e-22 110.2 187 42.2
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.9e-22 110.2 156 46.8
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 1.9e-22 110.2 96 62.5
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 1.9e-22 110.2 145 51.7
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 1.9e-22 110.2 127 55.1
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 3.3e-22 109.4 165 47.9
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 3.3e-22 109.4 165 47.9
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 4.3e-22 109.0 186 43.0
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 4.3e-22 109.0 145 52.4
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 4.3e-22 109.0 83 69.9
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 4.3e-22 109.0 181 44.8
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 5.6e-22 108.6 124 54.8
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 9.5e-22 107.8 133 51.1
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.2e-21 107.5 187 41.2
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 2.1e-21 106.7 101 60.4
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 2.8e-21 106.3 184 44.0
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 3.6e-21 105.9 110 56.4
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 6.2e-21 105.1 154 46.8
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 8.1e-21 104.8 110 55.5
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 1.1e-20 104.4 180 44.4
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.1e-20 104.4 185 44.9
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 2.3e-20 103.2 92 59.8
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.0e-20 102.4 132 50.8
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 4.4e-19 99.0 139 45.3
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 4.4e-19 99.0 185 41.1
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 5.8e-19 98.6 132 47.7
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 7.5e-19 98.2 119 51.3
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 9.9e-19 97.8 99 56.6
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 2.9e-18 96.3 75 70.7
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.9e-18 96.3 86 62.8
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 2.9e-18 96.3 134 47.8
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 4.9e-18 95.5 168 44.0
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 4.9e-18 95.5 137 44.5
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 8.3e-18 94.7 87 56.3
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 1.1e-17 94.4 185 40.5
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 1.4e-17 94.0 80 65.0
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 1.4e-17 94.0 80 65.0
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 1.4e-17 94.0 133 48.1
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 1.9e-17 93.6 128 47.7
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 1.9e-17 93.6 136 49.3
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 2.4e-17 93.2 137 46.7
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.0e-15 87.8 75 68.0
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 1.7e-15 87.0 133 45.1
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 5.1e-15 85.5 129 46.5
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 6.6e-15 85.1 118 47.5
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 1.5e-14 84.0 80 60.0
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 1.5e-14 84.0 84 61.9
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.9e-14 83.6 89 55.1
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.9e-14 83.6 119 46.2
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 3.3e-14 82.8 89 55.1
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 9.5e-14 81.3 126 48.4
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 1.6e-13 80.5 156 40.4
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 6.2e-13 78.6 161 42.2
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 1.8e-12 77.0 170 38.8
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.2e-11 74.3 56 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 1.5e-11 73.9 54 68.5
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 1.7e-10 70.5 99 46.5
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 1.1e-09 67.8 49 67.3
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 1.9e-09 67.0 107 40.2
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 4.1e-09 65.9 109 44.0
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 5.4e-09 65.5 67 50.7
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.7e-07 60.5 57 63.2
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.7e-07 60.5 57 63.2
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.3e-07 60.1 55 65.5
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.3e-07 60.1 55 65.5


User provided reference genes

Program Settings