Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 7.7e-113 410.6 225 100.0
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 1.1e-15 87.8 193 36.8
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.8e-13 80.5 177 38.4
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.1e-13 79.7 173 38.2
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.2e-12 77.8 169 37.9
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.6e-12 77.4 173 37.6
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 5.9e-12 75.5 146 41.1
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 5.9e-12 75.5 149 37.6
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.0e-11 74.7 170 35.9
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.2e-11 73.6 149 40.3
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 3.8e-11 72.8 168 35.1
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.9e-10 70.5 149 37.6
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.5e-10 70.1 59 69.5
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 4.2e-10 69.3 149 38.3
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 4.2e-10 69.3 149 38.3
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 5.5e-10 68.9 57 66.7
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 7.2e-10 68.6 119 41.2
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.6e-09 67.4 50 70.0
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 2.1e-09 67.0 54 63.0
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 2.1e-09 67.0 52 69.2
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 2.7e-09 66.6 51 66.7
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 2.7e-09 66.6 160 35.0
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 3.6e-09 66.2 49 69.4
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.6e-09 66.2 88 47.7
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 3.6e-09 66.2 50 70.0
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 4.7e-09 65.9 49 69.4
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 4.7e-09 65.9 149 36.2
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 4.7e-09 65.9 52 69.2
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 6.1e-09 65.5 61 60.7
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 6.1e-09 65.5 58 63.8
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 8.0e-09 65.1 173 34.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.0e-08 64.7 171 29.8
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.0e-08 64.7 88 47.7
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 1.0e-08 64.7 55 63.6
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.0e-08 64.7 49 67.3
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-08 64.3 49 69.4
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 1.4e-08 64.3 49 69.4
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 2.3e-08 63.5 154 35.1
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 2.3e-08 63.5 50 68.0
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 4.0e-08 62.8 46 69.6
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 5.2e-08 62.4 149 36.2
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 8.8e-08 61.6 51 68.6
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 8.8e-08 61.6 171 29.2
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 8.8e-08 61.6 50 66.0
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.1e-07 61.2 46 67.4
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.1e-07 61.2 46 67.4
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.1e-07 61.2 46 69.6
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.1e-07 61.2 49 69.4
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.5e-07 60.8 46 67.4
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.5e-07 60.8 46 69.6
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.5e-07 60.8 46 65.2
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 2.0e-07 60.5 46 67.4
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 2.0e-07 60.5 59 61.0
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 3.3e-07 59.7 46 67.4
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 4.4e-07 59.3 46 65.2
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 4.4e-07 59.3 46 65.2
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 5.7e-07 58.9 50 66.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 9.7e-07 58.2 46 65.2
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 9.7e-07 58.2 53 58.5
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.3e-06 57.8 46 65.2
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.3e-06 57.8 46 65.2
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.3e-06 57.8 169 30.8
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.7e-06 57.4 63 55.6
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.2e-06 57.0 63 55.6
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.8e-06 56.6 46 65.2
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.7e-06 56.2 57 61.4
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 4.8e-06 55.8 45 62.2
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 4.8e-06 55.8 46 63.0
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.8e-06 55.8 46 63.0
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 6.3e-06 55.5 175 30.3
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.3e-06 55.5 46 63.0
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 6.3e-06 55.5 44 63.6
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 6.3e-06 55.5 50 66.0
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 8.2e-06 55.1 50 64.0


User provided reference genes

Program Settings