Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 4.9e-102 374.4 180 100.0
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 7.1e-85 317.4 181 84.0
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.5e-82 309.7 181 82.3
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 4.6e-76 288.1 179 76.0
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 2.3e-75 285.8 146 87.7
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 3.0e-75 285.4 159 81.1
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 3.9e-75 285.0 165 78.8
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 5.1e-75 284.6 163 81.0
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 5.1e-75 284.6 163 81.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.1e-75 284.6 181 74.6
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 8.7e-75 283.9 158 81.6
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-74 283.5 163 80.4
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.5e-74 283.1 163 80.4
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.9e-74 282.7 165 81.8
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 2.5e-74 282.3 180 73.3
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 3.3e-74 282.0 165 81.8
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 7.4e-74 280.8 165 81.2
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 7.4e-74 280.8 163 80.4
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 7.4e-74 280.8 156 82.1
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 7.4e-74 280.8 157 81.5
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 9.6e-74 280.4 172 75.0
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 9.6e-74 280.4 173 76.3
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 1.3e-73 280.0 159 80.5
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.6e-73 279.6 185 74.6
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.6e-73 279.6 181 75.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.6e-73 279.6 164 78.7
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.6e-73 279.6 183 74.3
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.6e-73 279.6 177 76.8
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.8e-73 278.9 180 72.2
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 3.7e-73 278.5 154 83.1
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 4.8e-73 278.1 159 79.9
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 6.3e-73 277.7 165 80.6
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 6.3e-73 277.7 175 74.3
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 6.3e-73 277.7 180 75.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.1e-72 276.9 163 77.9
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.1e-72 276.9 163 77.9
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.8e-72 276.2 181 74.0
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.8e-72 276.2 186 71.5
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.8e-72 276.2 163 78.5
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.1e-72 275.4 175 73.7
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.1e-72 275.4 178 74.2
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.1e-72 275.4 161 78.9
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 4.1e-72 275.0 159 79.9
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 6.9e-72 274.2 165 78.8
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 6.9e-72 274.2 181 72.4
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 6.9e-72 274.2 166 80.7
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.2e-71 273.5 173 70.5
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.2e-71 273.5 171 74.9
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 1.2e-71 273.5 148 82.4
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.2e-71 273.5 159 79.9
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.2e-71 273.5 182 70.9
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.2e-71 273.5 176 71.6
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.5e-71 273.1 171 74.9
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.5e-71 273.1 180 72.2
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.6e-71 272.3 155 80.6
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.6e-71 272.3 155 80.6
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 2.6e-71 272.3 156 80.8
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.6e-71 272.3 156 80.8
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.0e-70 270.4 146 82.9
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.0e-70 270.4 173 74.6
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.3e-70 270.0 178 73.0
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.9e-70 268.9 156 77.6
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 2.9e-70 268.9 179 70.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 5.0e-70 268.1 181 71.3
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 1.1e-69 266.9 163 76.1
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 1.4e-69 266.5 152 80.3
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 1.9e-69 266.2 230 59.1
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 2.5e-69 265.8 147 81.0
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 4.2e-69 265.0 180 67.2
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 5.5e-69 264.6 170 70.0
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 9.3e-69 263.8 151 77.5
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 9.3e-69 263.8 144 78.5
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 1.2e-68 263.5 187 69.0
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.2e-68 263.5 170 69.4
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.1e-68 262.7 179 68.7
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 3.6e-68 261.9 151 79.5
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 4.6e-68 261.5 151 76.8
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 4.6e-68 261.5 147 80.3
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 2.3e-67 259.2 168 74.4
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.0e-67 258.8 141 79.4
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 3.9e-67 258.5 142 81.7
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 3.9e-67 258.5 162 72.8
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 8.7e-67 257.3 142 78.9
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 7.4e-66 254.2 179 66.5
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 7.4e-66 254.2 170 68.8
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 4.8e-65 251.5 168 69.0
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.8e-62 241.9 140 75.0
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.8e-62 241.9 140 72.9
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 8.5e-62 240.7 140 75.0
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 5.5e-61 238.0 167 65.9
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.5e-58 229.9 119 84.9
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 2.0e-58 229.6 126 81.0
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.2e-57 226.1 124 83.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 2.2e-57 226.1 149 71.8
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 2.2e-57 226.1 138 76.1
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.8e-57 225.7 127 77.2
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.7e-57 225.3 156 71.2
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 4.8e-57 224.9 134 76.9
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 4.8e-57 224.9 140 77.1
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.8e-56 223.0 126 79.4
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 2.4e-56 222.6 139 76.3
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 4.1e-56 221.9 127 78.0
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.2e-54 216.1 171 63.2
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.2e-52 210.3 120 77.5
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.1e-52 209.5 140 65.0
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 7.9e-52 207.6 147 70.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 5.2e-51 204.9 148 66.9
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 4.4e-50 201.8 130 74.6
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.3e-48 194.9 99 87.9
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.1e-45 187.2 129 68.2
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 2.8e-41 172.6 165 51.5
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 6.3e-41 171.4 181 50.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 8.2e-41 171.0 140 53.6
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.8e-40 169.9 150 53.3
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.1e-40 169.1 179 54.7
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.8e-38 162.2 152 50.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 5.0e-38 161.8 96 80.2
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.1e-37 160.6 165 50.3
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 5.5e-37 158.3 89 79.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.6e-36 156.8 116 64.7
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 4.8e-33 145.2 150 47.3
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 5.4e-32 141.7 164 49.4
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.3e-30 137.1 85 70.6
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.1e-29 134.0 156 42.9
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.5e-29 131.7 72 86.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 5.2e-27 125.2 132 47.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 8.8e-27 124.4 70 84.3
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 8.3e-25 117.9 59 84.7
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 5.6e-21 105.1 53 86.8
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.6e-20 103.6 118 44.9
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.8e-20 102.8 167 43.7
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 4.9e-17 92.0 82 54.9
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 5.0e-14 82.0 63 66.7
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.4e-11 73.9 174 29.9
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 4.0e-11 72.4 90 48.9
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 9.8e-10 67.8 78 46.2
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 3.7e-09 65.9 31 83.9
AUR62043796 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.4e-08 63.9 52 65.4


User provided reference genes

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