Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 1.1e-278 962.6 476 100.0
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 7.8e-256 886.7 485 89.7
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 5.6e-246 854.0 495 85.5
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 1.1e-238 829.7 473 85.2
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 1.1e-238 829.7 473 85.0
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 5.6e-238 827.4 473 85.2
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 5.6e-238 827.4 473 85.4
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 7.3e-238 827.0 473 84.4
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 9.6e-238 826.6 501 82.6
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 4.7e-237 824.3 473 83.9
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 8.1e-237 823.5 480 84.0
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.1e-236 823.2 473 85.4
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 1.4e-236 822.8 472 85.0
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 1.4e-236 822.8 473 83.7
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 3.1e-236 821.6 473 83.5
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 5.2e-236 820.8 480 82.7
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 2.0e-235 818.9 474 84.2
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 2.6e-235 818.5 480 83.5
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 2.6e-235 818.5 473 84.1
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 3.4e-235 818.1 488 81.1
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 4.4e-235 817.8 482 82.6
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 4.4e-235 817.8 472 84.1
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 5.8e-235 817.4 473 83.5
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 5.8e-235 817.4 477 82.4
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 1.7e-234 815.8 477 82.6
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 2.2e-234 815.5 491 81.5
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 2.2e-234 815.5 474 83.8
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 2.2e-234 815.5 473 83.3
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 2.9e-234 815.1 473 84.1
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 3.8e-234 814.7 484 82.4
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 4.9e-234 814.3 473 84.1
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 8.4e-234 813.5 473 84.4
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 1.1e-233 813.1 472 83.7
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 1.4e-233 812.8 473 83.5
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 1.4e-233 812.8 473 83.7
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 1.9e-233 812.4 473 81.6
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 1.9e-233 812.4 472 83.3
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 4.2e-233 811.2 474 82.7
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 4.2e-233 811.2 472 83.1
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 4.2e-233 811.2 473 83.1
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 7.1e-233 810.4 474 84.0
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 2.1e-232 808.9 478 83.1
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 3.5e-232 808.1 473 83.3
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 4.6e-232 807.7 487 81.3
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 6.0e-232 807.4 503 81.5
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 7.8e-232 807.0 478 81.6
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 7.8e-232 807.0 472 83.1
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.0e-231 806.6 473 83.3
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 5.1e-231 804.3 473 83.1
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 1.1e-230 803.1 474 81.6
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 1.1e-230 803.1 472 82.0
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 1.1e-230 803.1 473 82.0
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 4.3e-230 801.2 473 82.0
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 7.3e-230 800.4 485 79.6
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 7.3e-230 800.4 473 81.8
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 7.3e-230 800.4 485 79.4
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 2.1e-229 798.9 475 82.7
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 2.1e-229 798.9 485 78.6
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 2.8e-229 798.5 467 81.4
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 6.2e-229 797.3 472 81.8
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 1.1e-228 796.6 472 80.1
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 1.4e-228 796.2 473 81.0
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 1.8e-228 795.8 488 79.3
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 1.8e-228 795.8 488 79.3
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 9.0e-228 793.5 481 80.0
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 1.5e-227 792.7 473 81.0
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 1.5e-227 792.7 473 80.3
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 3.4e-227 791.6 472 79.7
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 3.4e-227 791.6 472 80.3
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 4.4e-227 791.2 471 80.0
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 1.7e-226 789.3 473 79.9
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 2.2e-226 788.9 473 79.5
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 2.9e-226 788.5 493 78.1
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 3.8e-226 788.1 472 78.8
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 8.4e-226 786.9 490 77.6
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 1.1e-225 786.6 473 80.5
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.4e-225 786.2 472 78.4
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 1.4e-225 786.2 472 78.6
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 1.4e-225 786.2 472 78.6
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 1.4e-225 786.2 472 78.6
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 1.4e-225 786.2 472 78.6
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 1.9e-225 785.8 472 78.4
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 2.4e-225 785.4 472 81.4
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 3.2e-225 785.0 497 77.3
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 7.1e-225 783.9 472 79.4
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 2.1e-224 782.3 472 78.4
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 2.1e-224 782.3 473 79.3
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 2.1e-224 782.3 473 79.3
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 6.0e-224 780.8 472 78.8
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 3.0e-223 778.5 472 80.9
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 5.1e-223 777.7 473 78.9
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 8.7e-223 776.9 472 78.6
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 1.5e-222 776.2 473 78.6
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 1.9e-222 775.8 494 77.1
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 3.3e-222 775.0 492 77.2
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 4.3e-222 774.6 504 75.8
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 4.3e-222 774.6 469 80.4
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 4.3e-222 774.6 472 78.6
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 1.6e-221 772.7 473 78.9
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 2.1e-221 772.3 489 76.9
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 6.2e-221 770.8 473 77.8
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 1.8e-220 769.2 473 78.9
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 6.9e-220 767.3 533 73.2
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 2.2e-218 762.3 473 76.1
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 3.8e-218 761.5 473 77.4
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 4.9e-218 761.1 444 82.7
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 6.4e-218 760.8 473 75.9
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 1.1e-217 760.0 471 76.9
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 7.1e-217 757.3 488 75.8
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 1.6e-216 756.1 488 75.8
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.1e-216 755.7 444 82.2
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 2.7e-216 755.4 528 70.5
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 2.7e-216 755.4 495 74.5
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 1.0e-215 753.4 473 77.0
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 3.9e-215 751.5 488 75.4
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 3.9e-215 751.5 441 83.2
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 6.7e-215 750.7 473 79.3
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.3e-213 746.5 440 82.0
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.8e-212 742.7 441 81.4
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 3.2e-209 731.9 473 74.0
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 5.5e-209 731.1 473 76.7
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 3.3e-206 721.8 485 73.6
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 2.4e-204 715.7 493 72.6
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.6e-197 693.0 397 84.9
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 6.5e-194 681.0 389 85.1
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 2.1e-192 676.0 489 69.3
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 6.7e-191 671.0 487 70.2
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 4.3e-190 668.3 485 71.3
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 1.8e-188 662.9 461 71.8
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 3.6e-184 648.7 386 80.1
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 1.4e-180 636.7 478 68.0
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 4.2e-177 625.2 472 65.3
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 3.5e-171 605.5 438 69.9
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 8.5e-170 600.9 371 77.6
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.6e-163 580.1 671 48.9
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 5.9e-163 578.2 373 76.7
AT1G31070 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 2.6e-158 562.8 349 76.2
HPP92_026365 Vanilla planifolia HOM05D003927 ORTHO05D004905 3.1e-143 512.7 363 71.6
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 2.4e-140 503.1 405 62.7
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 2.1e-131 473.4 443 59.1
Mapoly0089s0037 Marchantia polymorpha HOM05D003927 ORTHO05D004905 1.0e-130 471.1 350 65.7
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 3.9e-130 469.2 354 67.8
SGA_v2.0_scaffold638G53308 Striga asiatica HOM05D003927 ORTHO05D004905 2.8e-120 436.4 273 76.9
TAR626G0108 Trochodendron aralioides HOM05D003927 ORTHO05D004905 3.4e-118 429.5 238 84.9
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 2.5e-113 413.3 404 51.7
Cre07.g345300 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D004905 5.6e-105 385.6 473 46.1
TAR626G1704 Trochodendron aralioides HOM05D003927 ORTHO05D004905 5.5e-100 369.0 214 82.7
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 3.8e-93 346.3 481 40.3
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 5.1e-90 335.9 480 40.4
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 4.3e-89 332.8 466 41.2
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 4.3e-81 306.2 479 38.2
Zm00001eb085490 Zea mays HOM05D003927 ORTHO05D004905 2.1e-75 287.3 184 73.4
Zm00001eb010380 Zea mays HOM05D003927 ORTHO05D004905 4.1e-71 273.1 173 73.4
Zm00001eb188860 Zea mays HOM05D003927 ORTHO05D004905 3.4e-70 270.0 172 72.7
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 4.2e-68 263.1 485 35.5
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 5.5e-68 262.7 461 37.1
SGA_v2.0_scaffold77G25372 Striga asiatica HOM05D003927 ORTHO05D004905 9.4e-68 261.9 142 85.9
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 2.6e-65 253.8 364 39.8
HanXRQChr15g0483471 Helianthus annuus HOM05D003927 ORTHO05D004905 1.5e-60 238.0 160 73.8
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 2.8e-56 223.8 382 37.7
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 2.5e-52 210.7 399 34.6
Dinv29313 Davidia involucrata HOM05D003927 ORTHO05D004905 2.7e-51 207.2 109 88.1
HPP92_026366 Vanilla planifolia HOM05D003927 ORTHO05D004905 1.5e-49 201.4 108 86.1
SEGI_21324 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 1.3e-48 198.4 125 76.8
SEGI_30940 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 3.6e-43 180.3 108 77.8
GSVIVG01006086001 Vitis vinifera HOM05D003927 ORTHO05D004905 3.6e-43 180.3 105 84.8
SEGI_28054 Sequoiadendron giganteum HOM05D003927 ORTHO05D022820 1.4e-31 141.7 121 62.0
SEGI_01058 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 1.2e-30 138.7 84 75.0
Cre16.g696000 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D138947 1.2e-25 122.1 471 28.9
Sp2g07060 Schrenkiella parvula HOM05D003281 ORTHO05D004128 4.1e-23 113.6 95 57.9
VMungo1309G2465 Vigna mungo HOM05D003927 ORTHO05D022820 4.1e-23 113.6 123 55.3
Gohir.A03G217950 Gossypium hirsutum HOM05D003927 ORTHO05D022820 1.2e-19 102.1 59 83.1
Zm00001eb018150 Zea mays HOM05D003927 ORTHO05D001645 2.8e-19 100.9 95 52.6
SpUn0157_0030 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.5e-17 95.1 56 78.6
Peaxi162Scf00298g00083 Petunia axillaris HOM05D003927 ORTHO05D004905 4.4e-17 93.6 80 62.5
HanXRQChr02g0052471 Helianthus annuus HOM05D003927 ORTHO05D022820 6.0e-14 83.2 56 69.6
HanXRQChr08g0234841 Helianthus annuus HOM05D003927 ORTHO05D022820 1.0e-13 82.4 50 74.0
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 3.3e-12 77.4 388 24.7
HanXRQChr11g0327571 Helianthus annuus HOM05D003927 ORTHO05D227544 6.2e-11 73.2 46 71.7
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 8.1e-11 72.8 339 24.5
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.4e-10 71.2 225 28.0
CARHR125140 Cardamine hirsuta HOM05D003927 ORTHO05D004905 1.5e-09 68.6 45 68.9
QL11p013429 Quercus lobata HOM05D003927 ORTHO05D022820 9.9e-09 65.9 36 83.3


User provided reference genes

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