Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 2.1e-123 445.7 216 100.0
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 2.0e-86 322.8 222 71.6
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 5.0e-85 318.2 228 70.6
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.1e-83 312.8 228 70.2
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 4.7e-75 285.0 224 67.9
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 3.0e-69 265.8 201 66.2
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 3.0e-69 265.8 203 66.0
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 5.0e-69 265.0 205 64.9
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 7.3e-68 261.2 202 63.9
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 2.1e-67 259.6 207 64.7
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 2.1e-67 259.6 198 65.2
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 2.8e-67 259.2 202 63.4
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 2.3e-66 256.1 202 66.3
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 4.0e-66 255.4 198 64.6
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 6.8e-66 254.6 199 61.3
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 8.9e-66 254.2 208 63.0
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 8.9e-66 254.2 208 62.0
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 8.9e-66 254.2 208 62.0
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 3.4e-65 252.3 208 62.5
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 7.5e-65 251.1 200 61.0
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 9.8e-65 250.8 215 58.1
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 2.9e-64 249.2 211 59.2
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.9e-64 249.2 203 61.6
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 2.9e-64 249.2 208 61.5
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 3.7e-64 248.8 203 61.1
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 4.9e-64 248.4 202 64.4
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 6.4e-64 248.1 205 62.0
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.1e-63 247.3 208 61.1
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 1.4e-63 246.9 199 61.3
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 1.9e-63 246.5 205 61.5
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 3.2e-63 245.7 214 57.5
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 5.4e-63 245.0 205 60.0
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 7.0e-63 244.6 200 59.5
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 9.2e-63 244.2 201 59.2
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 9.2e-63 244.2 205 61.5
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.2e-62 243.8 205 60.0
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 2.0e-62 243.0 199 59.8
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 2.7e-62 242.7 213 56.8
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 6.0e-62 241.5 205 60.5
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 7.8e-62 241.1 201 59.7
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.0e-61 240.7 199 58.8
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.0e-61 240.7 208 59.1
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 1.3e-61 240.4 201 58.2
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 1.7e-61 240.0 202 58.9
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 3.0e-61 239.2 201 58.2
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 3.9e-61 238.8 205 60.5
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 3.9e-61 238.8 200 59.5
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 5.0e-61 238.4 199 59.3
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 5.0e-61 238.4 202 60.9
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 6.6e-61 238.0 199 59.8
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 6.6e-61 238.0 202 59.4
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 6.6e-61 238.0 200 59.5
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 1.1e-60 237.3 191 60.2
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.5e-60 236.9 199 59.3
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.9e-60 236.5 202 59.4
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 3.3e-60 235.7 209 59.3
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 3.3e-60 235.7 201 59.7
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 4.3e-60 235.3 200 61.5
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 5.6e-60 235.0 199 60.3
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 5.6e-60 235.0 205 57.1
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 7.3e-60 234.6 199 59.8
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 9.5e-60 234.2 208 57.2
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 1.2e-59 233.8 201 58.2
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.2e-59 233.8 200 60.5
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.6e-59 233.4 199 59.3
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.1e-59 233.0 199 59.3
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 2.1e-59 233.0 199 59.3
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 2.8e-59 232.6 212 53.8
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 4.7e-59 231.9 206 57.3
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 1.1e-58 230.7 204 57.4
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 1.1e-58 230.7 204 57.4
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 1.4e-58 230.3 200 57.5
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 1.4e-58 230.3 199 59.3
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.8e-58 229.9 200 57.5
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 4.0e-58 228.8 199 56.3
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 4.0e-58 228.8 199 57.8
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 6.8e-58 228.0 213 56.8
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.2e-57 227.3 200 56.5
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 1.2e-57 227.3 201 56.2
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.5e-57 226.9 201 55.2
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 2.0e-57 226.5 200 57.5
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 9.8e-57 224.2 200 56.5
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 2.9e-56 222.6 205 56.1
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 2.9e-56 222.6 207 56.5
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 3.7e-56 222.2 205 56.1
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 6.4e-56 221.5 188 57.4
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 3.2e-55 219.2 211 54.0
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 7.1e-55 218.0 223 52.5
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.1e-54 216.5 201 55.2
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.0e-53 214.2 177 61.0
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 1.3e-53 213.8 204 53.9
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 3.0e-53 212.6 165 67.3
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 3.9e-53 212.2 189 59.8
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.9e-53 212.2 206 52.4
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.9e-52 209.9 197 55.8
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 5.6e-52 208.4 228 50.9
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 3.1e-50 202.6 175 59.4
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 4.0e-50 202.2 194 55.2
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 5.6e-44 181.8 174 55.7
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 3.1e-42 176.0 207 48.8
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 4.9e-40 168.7 159 56.0
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 4.9e-40 168.7 117 67.5
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.4e-39 167.2 213 44.1
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 3.5e-38 162.5 189 46.0
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 5.1e-37 158.7 246 39.8
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 6.6e-37 158.3 236 38.6
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 8.7e-37 157.9 113 68.1
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.6e-35 153.7 163 50.9
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 2.1e-35 153.3 162 53.1
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 4.8e-35 152.1 153 53.6
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.5e-28 129.8 154 46.1
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 8.1e-27 124.8 118 50.0
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 5.5e-23 112.1 122 55.7
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.3e-21 107.5 128 48.4
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.0e-16 91.3 123 45.5
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 6.5e-16 88.6 132 43.2
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 3.9e-13 79.3 58 70.7
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 1.1e-12 77.8 48 70.8
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 9.0e-10 68.2 155 31.6
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 2.9e-08 63.2 84 41.7
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 4.2e-07 59.3 68 45.6
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 5.5e-07 58.9 86 34.9
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 2.1e-06 57.0 73 38.4


User provided reference genes

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