Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 0.0e+00 1233.8 697 100.0
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 1.4e-181 640.6 744 60.6
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.1e-133 481.5 639 50.1
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.0e-91 340.5 678 40.0
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 1.6e-79 301.6 668 38.2
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 8.3e-65 252.7 740 32.3
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 8.3e-65 252.7 796 33.8
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 4.6e-63 246.9 767 30.5
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 1.7e-62 245.0 673 33.7
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 6.6e-62 243.0 707 33.2
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 6.6e-62 243.0 734 32.8
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 1.1e-61 242.3 720 33.8
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 4.3e-61 240.4 730 33.7
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 2.8e-60 237.7 718 33.8
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.4e-59 235.3 734 34.3
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.8e-59 235.0 679 34.0
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 4.0e-59 233.8 736 34.1
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.2e-58 232.3 734 31.9
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.5e-58 231.9 733 32.6
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 2.0e-58 231.5 678 33.0
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.0e-58 231.5 678 33.0
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 2.0e-58 231.5 678 33.0
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 5.8e-58 229.9 680 33.7
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.2e-57 228.0 678 31.6
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 8.4e-57 226.1 674 32.8
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 7.1e-56 223.0 730 32.9
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 2.1e-55 221.5 706 33.6
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 6.0e-55 219.9 744 31.2
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 6.0e-55 219.9 741 33.6
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 7.8e-55 219.5 720 31.1
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 7.8e-55 219.5 707 32.2
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 1.7e-54 218.4 729 33.6
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 2.3e-54 218.0 689 32.1
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 5.1e-54 216.9 684 32.7
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 5.1e-54 216.9 687 34.5
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.1e-53 215.7 713 32.1
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 3.3e-53 214.2 693 34.2
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 5.6e-53 213.4 678 33.5
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 4.7e-52 210.3 733 33.0
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 6.2e-52 209.9 777 32.0
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.4e-51 208.8 589 33.6
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 1.2e-50 205.7 716 32.1
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.5e-50 205.3 723 32.0
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 2.6e-50 204.5 772 31.1
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 7.6e-50 203.0 775 29.4
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 1.7e-49 201.8 744 30.5
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.7e-49 201.8 706 31.4
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 2.9e-49 201.1 696 31.3
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 4.9e-49 200.3 676 30.5
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 1.4e-48 198.7 666 30.5
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.4e-48 198.7 740 31.1
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.4e-48 198.0 664 31.8
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 3.2e-48 197.6 730 32.5
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 4.2e-48 197.2 779 29.0
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 4.2e-48 197.2 617 31.3
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.2e-47 195.7 692 30.3
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.2e-47 195.7 705 29.6
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 1.6e-47 195.3 633 32.9
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 3.5e-47 194.1 787 29.6
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 3.5e-47 194.1 681 32.9
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 4.6e-47 193.7 674 31.3
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 7.8e-47 193.0 671 31.4
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.3e-46 192.2 678 31.9
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.3e-46 192.2 702 30.3
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 1.7e-46 191.8 664 30.1
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 2.3e-46 191.4 669 30.0
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 2.3e-46 191.4 794 29.5
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.0e-46 191.0 735 29.1
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.5e-45 188.7 701 29.7
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 1.9e-45 188.3 737 30.1
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 3.3e-45 187.6 674 31.2
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 4.3e-45 187.2 691 32.0
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 4.3e-45 187.2 592 31.8
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.1e-44 184.9 655 31.0
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 4.8e-44 183.7 726 31.0
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 8.1e-44 183.0 700 28.6
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 8.1e-44 183.0 723 29.5
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.4e-43 181.4 701 31.8
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 2.4e-43 181.4 675 30.7
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 1.2e-42 179.1 682 29.3
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 4.5e-42 177.2 768 34.0
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-41 175.6 680 29.1
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 1.3e-41 175.6 652 32.4
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.2e-41 174.9 701 28.8
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-40 172.6 597 29.6
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 2.4e-40 171.4 692 30.2
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 2.4e-40 171.4 704 29.8
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 3.2e-40 171.0 717 30.1
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 4.2e-40 170.6 714 29.3
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 9.3e-40 169.5 678 28.6
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.6e-39 168.7 618 31.6
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 6.0e-39 166.8 670 29.6
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 1.0e-38 166.0 740 30.0
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 8.7e-38 162.9 713 29.5
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 1.1e-37 162.5 702 29.6
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 3.3e-37 161.0 687 30.1
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 4.3e-37 160.6 669 29.1
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 2.1e-36 158.3 736 29.2
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 2.8e-36 157.9 744 30.9
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 3.7e-36 157.5 735 30.3
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 4.8e-36 157.1 719 28.4
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 2.4e-35 154.8 689 29.9
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 2.4e-35 154.8 655 29.3
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 4.0e-35 154.1 701 28.8
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 9.0e-35 152.9 668 29.8
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 2.0e-34 151.8 752 29.5
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 2.0e-34 151.8 757 29.1
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 4.6e-31 140.6 662 28.9
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.6e-31 140.6 677 28.1
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.0e-30 139.4 724 27.5
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 1.1e-27 129.4 464 33.2
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 1.8e-27 128.6 715 28.5
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 4.0e-27 127.5 689 28.9
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.5e-26 125.6 313 33.5
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 4.5e-26 124.0 653 28.3
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 1.0e-25 122.9 417 35.3
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 1.1e-24 119.4 637 26.2
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 5.5e-24 117.1 721 25.0
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 2.7e-23 114.8 645 26.2
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 6.0e-23 113.6 145 44.8
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 1.3e-22 112.5 643 27.1
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 5.1e-22 110.5 671 27.0
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 8.7e-22 109.8 681 28.2
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 2.5e-21 108.2 663 25.9
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 5.7e-21 107.1 535 27.7
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 7.4e-21 106.7 678 26.7
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 2.2e-20 105.1 772 25.6
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 4.8e-20 104.0 676 27.2
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 6.3e-20 103.6 655 27.6
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.1e-19 102.8 524 30.9
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 2.2e-17 95.1 677 26.1
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 7.2e-16 90.1 291 34.4
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 7.2e-16 90.1 256 37.5
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 3.6e-15 87.8 291 34.0
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.4e-14 85.9 389 29.8
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 1.5e-13 82.4 729 26.3
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 3.3e-13 81.3 304 32.6
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 5.7e-13 80.5 297 32.0
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 5.7e-13 80.5 297 32.0
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 9.7e-13 79.7 308 32.8
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 1.3e-12 79.3 285 31.2
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 4.8e-12 77.4 564 25.2
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 8.2e-12 76.6 182 39.6
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 8.2e-12 76.6 302 32.5
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 4.1e-11 74.3 174 26.4
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 2.6e-10 71.6 312 29.5
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 2.6e-10 71.6 176 27.8
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 1.3e-09 69.3 301 30.2
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 1.7e-09 68.9 220 28.6
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 2.9e-09 68.2 308 28.6
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 6.5e-09 67.0 299 29.4
HPP92_022144 Vanilla planifolia HOM05D003765 ORTHO05D004561 6.5e-09 67.0 220 28.2
AL7G27690 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.1e-08 66.2 302 28.5
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 1.9e-08 65.5 299 29.1
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 2.5e-08 65.1 306 29.1
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 1.2e-07 62.8 149 33.6
Carub.0007s1558 Capsella rubella HOM05D003765 ORTHO05D004561 2.7e-07 61.6 263 30.4
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 6.1e-07 60.5 580 22.6
VMungo0100G0003 Vigna mungo HOM05D003765 ORTHO05D004561 1.0e-06 59.7 87 49.4
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 1.8e-06 58.9 616 23.1
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 2.3e-06 58.5 268 30.2
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 3.0e-06 58.2 158 33.5
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 3.0e-06 58.2 158 33.5
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 3.0e-06 58.2 173 27.2
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 3.9e-06 57.8 184 25.0
Lj6g0009284 Lotus japonicus HOM05D002515 ORTHO05D002722 5.1e-06 57.4 172 26.7
Os04g0106500 Oryza sativa ssp. japonica HOM05D003765 ORTHO05D004561 8.8e-06 56.6 212 29.7


User provided reference genes

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