Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 1.9e-173 612.5 316 100.0
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 7.8e-111 404.4 316 71.8
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 4.1e-104 382.1 316 68.7
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 5.1e-102 375.2 316 67.7
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 8.4e-57 224.9 303 53.5
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 1.2e-34 151.4 325 39.7
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 2.3e-30 137.1 312 41.3
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 6.7e-30 135.6 278 41.7
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 3.3e-29 133.3 310 39.4
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 7.4e-29 132.1 293 38.9
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 9.7e-29 131.7 307 37.5
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 2.2e-28 130.6 302 39.1
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 2.8e-28 130.2 304 39.1
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 1.1e-27 128.3 302 39.1
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 2.0e-26 124.0 286 40.6
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 7.7e-26 122.1 286 35.7
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 7.7e-26 122.1 306 36.6
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 1.7e-25 120.9 318 38.1
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 2.9e-25 120.2 291 39.5
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 6.5e-25 119.0 323 39.9
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 8.5e-25 118.6 310 36.5
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 1.1e-24 118.2 287 38.3
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.1e-24 118.2 287 38.3
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.1e-24 118.2 287 38.3
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.9e-24 117.5 279 38.7
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 2.5e-24 117.1 288 37.5
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 9.4e-24 115.2 302 35.4
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.2e-23 114.8 289 37.4
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 1.2e-23 114.8 277 40.1
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 2.1e-23 114.0 317 37.9
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 4.0e-22 109.8 294 36.7
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 4.0e-22 109.8 304 37.2
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 1.5e-21 107.8 280 39.3
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 1.5e-21 107.8 304 35.2
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 7.5e-21 105.5 301 33.6
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.3e-20 104.8 277 35.7
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 2.2e-20 104.0 318 34.9
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 2.8e-20 103.6 283 35.0
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 2.8e-20 103.6 325 36.0
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 1.1e-19 101.7 299 33.8
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.1e-19 101.7 275 36.7
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 1.4e-19 101.3 276 38.4
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.8e-19 100.9 288 36.8
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 1.2e-18 98.2 302 37.4
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 2.7e-18 97.1 278 32.4
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 2.7e-18 97.1 270 36.7
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 2.7e-18 97.1 330 34.5
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 3.5e-18 96.7 306 36.3
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 5.9e-18 95.9 288 37.5
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 7.7e-18 95.5 331 32.3
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 7.7e-18 95.5 212 39.2
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 1.7e-17 94.4 303 35.3
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 2.2e-17 94.0 304 32.9
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 3.8e-17 93.2 270 34.8
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 5.0e-17 92.8 293 35.8
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 4.2e-16 89.7 311 32.5
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 3.6e-15 86.7 314 27.7
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 1.4e-14 84.7 290 30.0
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 1.4e-14 84.7 223 35.9
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 1.4e-14 84.7 330 33.3
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 3.0e-14 83.6 356 32.6
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 4.0e-14 83.2 291 34.4
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 8.8e-14 82.0 333 32.4
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 8.8e-14 82.0 351 31.9
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 1.2e-13 81.6 295 32.5
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 1.5e-13 81.3 286 31.1
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 1.5e-13 81.3 121 43.8
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 7.5e-13 79.0 324 33.0
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 1.3e-12 78.2 348 31.3
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 1.7e-12 77.8 290 29.0
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 2.2e-12 77.4 349 30.7
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 2.2e-12 77.4 138 37.0
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 2.8e-12 77.0 318 29.6
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 2.8e-12 77.0 212 34.0
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.8e-11 74.3 278 30.6
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 9.1e-11 72.0 286 33.2
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 3.5e-10 70.1 311 33.8
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 7.7e-10 68.9 326 31.3
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 7.7e-10 68.9 322 32.3
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 1.0e-09 68.6 263 33.5
arahy.Tifrunner.gnm1.ann1.1QTB59 Arachis hypogaea HOM05D007548 ORTHO05D009527 1.7e-09 67.8 132 37.9
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 3.8e-09 66.6 279 33.7
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 3.8e-09 66.6 208 32.2
arahy.Tifrunner.gnm1.ann1.Z61DE3 Arachis hypogaea HOM05D007548 ORTHO05D009527 5.0e-09 66.2 103 37.9
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 5.0e-09 66.2 326 31.3
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 5.0e-09 66.2 326 31.3
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 5.0e-09 66.2 326 31.3
ECA233G0652 Erigeron canadensis HOM05D007548 ORTHO05D009527 1.9e-08 64.3 334 31.1
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 8.0e-07 58.9 327 29.1
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 8.0e-07 58.9 324 29.0
Lalb_Chr21g0304861 Lupinus albus HOM05D007548 ORTHO05D009527 1.8e-06 57.8 298 28.9


User provided reference genes

Program Settings