Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 5.6e-270 933.7 477 100.0
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 6.3e-189 664.5 500 74.6
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 4.2e-169 598.6 474 71.1
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.5e-158 563.5 372 82.0
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.1e-153 547.4 468 66.0
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 3.3e-153 545.8 469 66.1
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 4.0e-151 538.9 479 63.9
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.9e-148 530.0 467 63.4
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 7.0e-148 528.1 464 65.3
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 1.6e-147 526.9 463 63.9
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 6.0e-147 525.0 452 64.8
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 8.6e-146 521.2 453 65.6
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.5e-145 520.4 467 63.2
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.5e-145 519.6 470 63.2
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 9.5e-145 517.7 475 63.2
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 6.2e-144 515.0 474 60.8
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 8.1e-144 514.6 462 63.9
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 3.4e-142 509.2 454 63.7
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.8e-142 508.4 473 61.7
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.3e-141 507.3 469 61.4
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.7e-141 506.9 461 62.0
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 3.7e-141 505.8 470 61.5
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 3.7e-141 505.8 434 66.6
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 3.7e-141 505.8 467 60.6
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.4e-140 503.8 486 61.3
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.4e-140 503.1 486 61.3
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 3.2e-140 502.7 462 62.3
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 4.1e-140 502.3 434 64.5
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 5.4e-140 501.9 460 61.5
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 5.4e-140 501.9 473 61.9
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 9.2e-140 501.1 466 62.0
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 2.1e-139 500.0 475 61.1
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.7e-139 499.6 439 65.1
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 7.8e-139 498.0 470 60.4
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.3e-138 497.3 448 61.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 1.7e-138 496.9 478 60.3
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 1.7e-138 496.9 462 62.6
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 3.9e-138 495.7 464 60.8
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 6.6e-138 495.0 467 61.2
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 6.6e-138 495.0 471 60.9
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 1.9e-137 493.4 432 63.7
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 2.5e-137 493.0 469 59.9
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.5e-137 493.0 485 59.2
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.3e-137 492.7 467 61.2
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.6e-136 490.3 480 60.2
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.6e-136 490.3 480 60.2
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 2.8e-136 489.6 471 61.4
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 4.7e-136 488.8 471 60.1
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 4.7e-136 488.8 429 63.6
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-135 487.6 475 60.2
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 2.3e-135 486.5 449 62.4
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 6.8e-135 485.0 471 60.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 8.9e-135 484.6 440 64.1
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.4e-134 482.6 470 60.6
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 3.4e-134 482.6 566 53.4
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.4e-134 482.3 472 60.8
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 5.8e-134 481.9 519 56.1
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 5.8e-134 481.9 500 56.4
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.6e-134 481.5 466 61.2
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.7e-133 480.3 462 60.4
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 2.9e-133 479.6 465 59.1
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 2.9e-133 479.6 435 62.3
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 2.9e-133 479.6 496 57.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 4.9e-133 478.8 463 60.5
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 8.4e-133 478.0 468 60.5
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.4e-132 477.2 458 59.8
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 7.1e-132 474.9 488 57.4
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.3e-130 470.7 466 59.2
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 1.3e-130 470.7 471 59.7
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.3e-130 469.9 485 58.4
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 6.6e-130 468.4 450 60.2
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-129 467.6 460 59.8
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 7.3e-129 464.9 459 58.4
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.3e-129 464.9 475 57.9
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.6e-128 463.8 431 61.0
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.1e-128 463.4 476 56.9
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 6.2e-128 461.8 438 60.5
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.5e-126 457.2 470 57.4
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.8e-126 455.3 423 60.3
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 9.9e-126 454.5 470 58.5
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.2e-125 453.4 446 60.1
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.2e-125 453.4 433 59.6
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.2e-125 453.4 433 59.6
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.9e-125 452.2 468 56.0
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 4.9e-125 452.2 458 58.5
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.1e-124 451.1 473 57.1
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.4e-124 450.7 450 59.6
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 2.4e-124 449.9 471 56.9
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 3.2e-124 449.5 425 59.8
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 4.2e-124 449.1 471 57.1
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.4e-124 448.7 452 58.8
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 2.7e-123 446.4 474 56.8
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 3.5e-123 446.0 471 56.3
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 3.5e-123 446.0 428 57.7
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 2.3e-122 443.4 445 59.3
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.2e-118 431.0 478 53.3
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 4.5e-118 429.1 471 55.4
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 5.1e-114 415.6 327 69.7
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-113 414.5 386 61.4
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 7.4e-113 411.8 491 51.1
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.3e-112 411.0 542 47.2
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.8e-111 407.1 416 55.5
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.8e-111 407.1 434 53.7
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.0e-110 403.7 433 55.0
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 4.9e-109 399.1 428 53.7
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 6.4e-109 398.7 387 58.7
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.8e-106 390.6 465 52.9
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 8.7e-106 388.3 433 52.0
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 5.6e-105 385.6 428 50.7
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 9.6e-105 384.8 433 51.5
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 1.6e-104 384.0 488 50.0
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 7.6e-102 375.2 371 60.4
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 2.2e-101 373.6 478 49.2
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 4.2e-100 369.4 443 50.3
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.4e-97 358.6 445 48.1
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 2.0e-94 350.5 432 50.5
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-93 347.8 344 55.8
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 7.2e-92 342.0 438 50.5
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.3e-90 337.0 397 51.9
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 3.0e-90 336.7 396 51.8
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 2.2e-85 320.5 383 50.7
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 8.5e-85 318.5 402 48.3
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 8.5e-85 318.5 402 48.8
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 3.9e-82 309.7 396 50.5
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.8e-79 300.8 288 58.3
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 6.9e-79 298.9 390 49.5
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 1.2e-78 298.1 299 58.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 5.0e-69 266.2 364 47.3
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.7e-67 260.4 351 46.2
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.6e-67 260.0 357 47.1
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.0e-66 256.5 427 42.2
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 2.6e-65 253.8 393 42.5
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.6e-59 234.6 254 55.9
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 4.0e-58 229.9 279 50.2
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 1.5e-57 228.0 333 44.4
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.3e-53 214.2 330 44.2
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 2.8e-51 207.2 288 48.3
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 1.0e-50 205.3 121 86.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 9.8e-49 198.7 186 58.1
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.0e-45 186.4 129 77.5
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.6e-45 186.0 303 42.6
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.4e-39 168.3 157 56.1
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.4e-39 167.5 131 69.5
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 3.0e-37 160.6 135 68.1
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 4.7e-35 153.3 103 73.8
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 6.8e-34 149.4 122 72.1
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-25 120.9 148 52.0
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.2e-23 112.5 66 86.4
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.6e-19 101.7 147 42.9
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.1e-18 99.0 73 71.2
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.5e-17 95.1 78 65.4
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.4e-17 93.6 107 52.3
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.4e-15 88.6 56 76.8
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 5.4e-15 86.7 121 45.5
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 7.1e-15 86.3 56 75.0
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 6.0e-14 83.2 223 35.4
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.0e-13 82.4 52 76.9
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.3e-13 81.3 50 80.0
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.0e-13 80.9 78 56.4
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.5e-12 78.6 107 47.7
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 2.1e-11 74.7 182 33.0
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 2.1e-11 74.7 84 56.0
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 1.1e-10 72.4 40 85.0
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.4e-10 71.2 154 34.4
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 5.8e-09 66.6 81 54.3
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 7.6e-09 66.2 36 80.6
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.9e-08 64.3 36 80.6
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 4.9e-08 63.5 96 45.8
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 8.4e-08 62.8 36 86.1
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 7.1e-07 59.7 65 44.6


User provided reference genes

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