Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 5.4e-167 590.9 289 100.0
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.8e-154 549.3 282 95.0
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.0e-149 531.2 288 91.3
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 7.5e-145 517.3 288 86.8
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.3e-144 516.5 288 87.5
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 4.9e-144 514.6 288 87.5
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 6.4e-144 514.2 288 87.5
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.4e-143 513.1 288 87.2
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 5.4e-143 511.1 289 87.2
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 7.0e-143 510.8 288 85.8
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.2e-142 510.0 288 85.8
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.6e-142 509.6 288 86.5
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.1e-142 509.2 287 85.7
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 2.1e-142 509.2 288 85.8
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.7e-142 508.8 288 86.1
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.7e-142 508.8 288 86.5
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 3.5e-142 508.4 289 86.2
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.3e-141 506.5 288 85.4
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.7e-141 506.1 289 86.2
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.7e-141 506.1 288 85.8
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.7e-141 506.1 287 84.0
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.3e-141 505.8 288 86.1
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 6.6e-141 504.2 288 85.8
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 8.6e-141 503.8 288 84.0
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 8.6e-141 503.8 288 86.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.1e-140 503.4 283 85.9
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.5e-140 503.1 289 84.4
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 1.5e-140 503.1 288 85.1
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.5e-140 503.1 288 84.4
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.5e-140 502.3 288 84.7
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 4.3e-140 501.5 288 84.4
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 4.3e-140 501.5 288 85.4
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 4.3e-140 501.5 288 84.0
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 7.3e-140 500.7 288 85.1
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 9.5e-140 500.4 288 83.3
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 4.7e-139 498.0 288 83.3
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.4e-138 496.5 289 85.1
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.4e-138 496.5 289 83.0
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 2.3e-138 495.7 288 82.6
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.3e-138 495.7 288 82.6
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.1e-138 495.4 289 84.8
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.0e-138 495.0 289 84.8
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.2e-138 494.6 288 83.0
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.8e-138 494.2 289 84.4
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 6.8e-138 494.2 311 79.4
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.2e-137 493.4 288 82.6
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.5e-137 493.0 288 82.6
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.0e-137 492.7 289 84.1
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.0e-137 492.7 289 84.1
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 2.6e-137 492.3 288 83.3
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 2.6e-137 492.3 288 82.6
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 3.4e-137 491.9 288 82.3
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 3.4e-137 491.9 288 83.3
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 4.4e-137 491.5 288 83.3
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.8e-137 491.1 303 80.2
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 7.5e-137 490.7 288 83.3
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 7.5e-137 490.7 288 82.6
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 7.5e-137 490.7 288 83.0
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 9.9e-137 490.3 288 82.3
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 9.9e-137 490.3 288 83.3
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 9.9e-137 490.3 288 81.9
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 9.9e-137 490.3 288 83.3
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.7e-136 489.6 288 81.2
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 2.2e-136 489.2 288 83.0
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.9e-136 488.8 289 83.0
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 2.9e-136 488.8 289 83.0
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.9e-136 488.8 288 82.3
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.9e-136 488.8 289 82.0
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 4.9e-136 488.0 288 83.7
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 1.1e-135 486.9 288 81.9
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.1e-135 486.9 288 82.6
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 1.4e-135 486.5 288 82.3
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 1.9e-135 486.1 288 83.0
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 3.2e-135 485.3 290 82.4
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 4.1e-135 485.0 288 80.9
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 5.4e-135 484.6 290 82.4
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 9.2e-135 483.8 289 83.0
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 2.1e-134 482.6 288 81.2
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.7e-134 482.3 288 81.9
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 3.5e-134 481.9 288 81.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 7.8e-134 480.7 355 70.1
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.0e-133 480.3 288 81.6
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.7e-133 479.6 288 80.6
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.3e-133 479.2 288 80.9
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.0e-133 478.8 288 80.9
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 5.1e-133 478.0 288 79.2
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 8.6e-133 477.2 288 81.6
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 8.6e-133 477.2 295 80.0
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 8.6e-133 477.2 287 80.8
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.1e-132 476.9 288 79.5
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.1e-132 476.9 287 81.9
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.5e-132 476.5 282 82.6
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.5e-132 476.5 288 80.2
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.3e-132 475.3 278 81.7
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 1.2e-131 473.4 292 80.5
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.6e-131 473.0 289 78.9
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.1e-131 472.6 288 81.6
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 4.7e-131 471.5 290 81.4
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.7e-131 471.5 290 81.4
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.2e-131 471.1 290 81.0
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.1e-130 470.3 289 78.5
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.4e-130 469.9 290 81.0
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.4e-130 469.9 290 81.0
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.4e-130 469.2 288 81.2
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.4e-130 469.2 312 75.0
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.2e-130 468.0 290 81.0
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 5.2e-130 468.0 287 81.2
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.8e-130 467.6 290 81.0
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 5.8e-129 464.5 288 79.9
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-128 463.4 288 80.6
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 2.9e-128 462.2 288 77.1
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 5.4e-127 458.0 294 76.5
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 6.0e-126 454.5 290 77.6
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 8.7e-125 450.7 291 77.3
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-122 443.4 291 76.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-122 443.4 291 76.6
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.9e-120 435.6 293 72.0
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 4.9e-120 434.9 287 75.6
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.4e-119 431.4 287 76.3
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.2e-118 430.3 287 74.6
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.3e-117 426.8 300 72.0
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 1.3e-117 426.8 267 76.0
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 3.9e-117 425.2 288 73.3
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.1e-116 423.7 288 72.9
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.5e-116 423.3 236 87.3
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 1.5e-116 423.3 284 73.2
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 5.3e-114 414.8 437 54.0
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 1.7e-112 409.8 287 69.3
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 6.4e-112 407.9 289 70.9
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 3.5e-110 402.1 287 64.1
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 3.7e-107 392.1 296 66.9
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.1e-106 389.0 213 89.7
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 4.6e-102 375.2 288 66.0
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.0e-101 374.0 235 78.3
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 3.6e-78 295.8 192 78.1
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 3.9e-77 292.4 173 83.2
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.7e-76 287.7 172 81.4
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.4e-69 267.3 272 53.7
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 6.3e-67 258.5 228 55.7
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.3e-64 250.8 151 79.5
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.3e-64 250.8 151 79.5
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 5.0e-64 248.8 286 46.5
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.8e-61 240.4 290 44.8
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.5e-60 237.3 168 67.9
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 5.3e-58 228.8 140 78.6
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 2.7e-57 226.5 112 93.8
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 3.4e-52 209.5 182 58.8
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 8.3e-51 204.9 258 48.1
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 2.5e-47 193.4 281 40.6
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 6.8e-45 185.3 113 75.2
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-44 184.5 160 63.1
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 1.2e-44 184.5 284 37.7
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.2e-44 184.5 113 75.2
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.2e-44 184.5 113 75.2
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 2.6e-44 183.3 129 69.8
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 5.7e-44 182.2 288 43.1
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.4e-42 176.8 149 64.4
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.0e-41 173.7 139 63.3
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.9e-41 172.2 142 64.1
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.2e-37 159.1 179 53.6
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 4.4e-36 156.0 169 53.3
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 8.6e-32 141.7 259 34.4
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 5.6e-31 139.0 108 64.8
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.6e-30 136.3 76 82.9
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.4e-29 134.4 116 62.9
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.9e-26 124.0 68 80.9
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 4.1e-26 122.9 114 58.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 1.2e-25 121.3 93 68.8
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 1.2e-25 121.3 93 68.8
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 3.0e-24 116.7 60 86.7
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 6.8e-21 105.5 72 65.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 2.9e-19 100.1 53 88.7
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 2.9e-19 100.1 53 86.8
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 5.1e-16 89.4 47 85.1
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 2.8e-14 83.6 100 43.0
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.6e-14 83.2 90 58.9
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 7.6e-12 75.5 102 50.0
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-08 64.7 44 70.5
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 1.1e-07 61.6 37 67.6
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 9.6e-07 58.5 37 64.9
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 3.6e-06 56.6 33 81.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 3.6e-06 56.6 33 81.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 3.6e-06 56.6 33 81.8


User provided reference genes

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