Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 4.0e-215 751.1 373 100.0
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 7.0e-135 484.6 448 56.0
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 8.3e-128 461.1 382 62.0
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 5.6e-100 368.6 364 53.0
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.0e-93 346.3 387 51.4
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.8e-80 302.8 366 44.8
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 3.1e-74 283.1 375 43.5
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 9.9e-73 278.1 365 42.5
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.7e-72 277.3 391 40.7
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 6.4e-72 275.4 378 42.3
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 1.2e-70 271.2 368 39.9
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.1e-70 270.4 368 39.9
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 3.5e-70 269.6 358 39.4
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.3e-69 266.9 364 38.7
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 2.3e-69 266.9 366 40.2
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 5.1e-69 265.8 410 38.5
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 6.7e-69 265.4 373 40.8
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 4.3e-68 262.7 363 41.0
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.1e-66 258.1 367 40.1
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 9.0e-66 255.0 371 40.2
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.0e-65 253.8 383 39.7
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 1.7e-64 250.8 390 36.7
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 3.8e-64 249.6 388 40.7
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 6.0e-62 242.3 364 39.6
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 2.3e-61 240.4 363 38.8
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 3.0e-61 240.0 384 39.6
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 5.1e-61 239.2 361 36.6
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 5.6e-60 235.7 359 37.0
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 9.6e-60 235.0 365 36.2
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.6e-59 234.2 414 34.5
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 8.2e-59 231.9 439 33.7
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.1e-58 231.5 367 37.3
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 1.4e-58 231.1 310 41.0
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.4e-58 230.3 379 35.9
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 2.4e-58 230.3 369 35.0
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 5.3e-58 229.2 370 35.4
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 5.3e-58 229.2 365 37.0
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 5.3e-58 229.2 343 39.4
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 2.6e-57 226.9 377 36.3
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.8e-57 225.7 361 35.5
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-56 224.6 365 36.7
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.7e-56 224.2 302 42.1
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.2e-56 223.8 390 37.4
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 6.5e-56 222.2 421 32.1
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 1.1e-55 221.5 398 36.4
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.9e-55 220.7 358 33.5
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 2.5e-55 220.3 472 32.2
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.5e-55 220.3 367 34.3
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 3.2e-55 219.9 369 34.1
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.2e-55 219.9 370 35.7
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 5.5e-55 219.2 366 35.8
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 9.3e-55 218.4 370 35.1
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.6e-54 217.6 392 32.9
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.7e-54 216.9 369 36.0
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 4.6e-54 216.1 370 35.9
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.0e-54 215.7 369 33.9
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.0e-53 214.9 448 33.5
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.8e-53 214.2 350 38.6
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 6.7e-53 212.2 359 35.1
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 4.3e-52 209.5 412 33.5
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 9.7e-52 208.4 322 37.0
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.6e-51 207.6 364 34.1
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-50 204.5 357 35.0
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 4.1e-50 203.0 372 34.7
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.5e-49 201.1 361 36.6
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.6e-49 200.3 189 48.1
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 2.9e-48 196.8 357 32.2
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 6.5e-48 195.7 359 33.7
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 8.5e-48 195.3 376 33.0
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.4e-47 194.5 362 34.0
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-47 194.5 445 30.3
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 4.2e-47 193.0 170 52.4
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 7.2e-47 192.2 393 34.4
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 3.6e-46 189.9 343 32.4
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 4.6e-46 189.5 306 36.6
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 1.1e-44 184.9 384 32.8
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.5e-44 183.7 170 50.0
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.3e-44 183.3 185 47.0
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 4.3e-44 183.0 370 32.4
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.2e-43 180.6 440 30.7
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 6.3e-43 179.1 363 32.5
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.2e-41 174.9 174 44.3
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 7.7e-41 172.2 327 33.9
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 7.7e-41 172.2 366 29.0
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.2e-40 170.6 373 28.7
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 5.0e-40 169.5 187 43.9
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 8.5e-40 168.7 189 40.7
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.1e-38 164.1 220 37.3
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.9e-37 159.8 319 33.2
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 5.1e-37 159.5 347 31.1
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 6.7e-37 159.1 189 39.2
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.1e-36 158.3 365 29.3
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 1.5e-36 157.9 310 35.8
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 3.3e-36 156.8 339 27.7
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 5.7e-36 156.0 369 29.5
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 7.4e-36 155.6 173 43.4
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 9.7e-36 155.2 207 37.7
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 6.3e-35 152.5 254 31.9
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 8.2e-35 152.1 391 28.1
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.4e-34 151.4 356 29.2
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 4.1e-34 149.8 172 39.5
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 5.3e-34 149.4 158 45.6
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.0e-33 147.5 189 39.7
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.6e-33 147.1 189 39.2
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 3.4e-33 146.7 367 29.4
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 4.5e-33 146.4 152 42.1
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.9e-33 146.0 340 29.1
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-32 144.4 339 27.1
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.2e-32 144.1 169 40.2
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 3.8e-32 143.3 176 36.4
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 5.5e-31 139.4 172 35.5
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 7.2e-31 139.0 169 39.1
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 7.2e-31 139.0 361 29.1
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 9.4e-31 138.7 246 35.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 3.6e-30 136.7 176 38.6
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 8.0e-30 135.6 206 38.8
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 8.0e-30 135.6 206 38.8
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 3.0e-29 133.7 365 27.9
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 8.8e-29 132.1 219 36.1
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-28 131.7 182 37.9
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-28 131.3 218 34.9
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.5e-28 131.3 172 37.2
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.5e-28 131.3 172 37.2
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 2.0e-28 131.0 284 29.2
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 5.7e-28 129.4 175 38.3
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 5.7e-28 129.4 381 29.4
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 9.7e-28 128.6 173 38.7
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 1.3e-27 128.3 339 26.5
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.7e-27 127.9 171 38.6
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 2.8e-27 127.1 172 36.6
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 3.7e-27 126.7 180 36.1
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 4.8e-27 126.3 185 34.6
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.8e-27 126.3 106 52.8
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 8.2e-27 125.6 294 30.3
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 2.4e-26 124.0 109 48.6
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 5.3e-26 122.9 383 27.2
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 6.5e-24 115.9 97 44.3
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 7.2e-23 112.5 138 37.7
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.2e-22 111.7 193 32.1
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 3.6e-22 110.2 172 34.3
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 5.7e-20 102.8 100 46.0
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 5.7e-20 102.8 119 37.8
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 9.7e-20 102.1 149 31.5
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 9.7e-20 102.1 149 31.5
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 9.7e-20 102.1 98 45.9
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.3e-19 101.7 135 33.3
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.3e-19 101.7 182 36.8
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 6.3e-19 99.4 106 43.4
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 2.7e-17 94.0 145 31.0
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.5e-17 93.2 196 31.1
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.8e-16 90.1 189 37.0
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.1e-15 88.6 144 37.5
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 9.4e-15 85.5 227 30.0
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.6e-14 83.6 66 53.0
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.4e-13 81.6 308 26.0
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.4e-13 81.6 130 36.2
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 5.7e-12 76.3 112 33.0
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 7.5e-12 75.9 238 30.7
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-11 75.1 229 29.7
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 3.7e-11 73.6 95 38.9
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 5.4e-10 69.7 86 45.3
SGA_v2.0_scaffold168G38539 Striga asiatica HOM05D001580 ORTHO05D001517 5.9e-09 66.2 221 26.7
PGSC0003DMG400003974 Solanum tuberosum HOM05D001580 ORTHO05D001517 3.3e-07 60.5 160 27.5
Lj6g0007351 Lotus japonicus HOM05D001580 ORTHO05D001517 4.2e-07 60.1 164 25.6
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.5e-07 59.7 194 27.8
Sopen11g001500 Solanum pennellii HOM05D001580 ORTHO05D001517 5.5e-07 59.7 162 25.3
Sc16g0007960 Simmondsia chinensis HOM05D001580 ORTHO05D001517 7.2e-07 59.3 167 25.1
Sopen11g007360 Solanum pennellii HOM05D001580 ORTHO05D001517 7.2e-07 59.3 158 28.5
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 7.2e-07 59.3 51 51.0
Sopen11g001510 Solanum pennellii HOM05D001580 ORTHO05D001517 1.6e-06 58.2 160 27.5
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 3.6e-06 57.0 57 49.1
HanXRQChr07g0195731 Helianthus annuus HOM05D001580 ORTHO05D001517 4.7e-06 56.6 160 26.2
Psat7g121480 Pisum sativum HOM05D001580 ORTHO05D001517 6.1e-06 56.2 160 28.1
SalBow5G4944 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.1e-06 56.2 99 36.4
Solyc11g005525.1 Solanum lycopersicum HOM05D001580 ORTHO05D001517 6.1e-06 56.2 160 26.2


User provided reference genes

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