Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 7.0e-90 334.0 172 100.0
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 2.3e-69 265.8 211 70.6
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 9.9e-68 260.4 211 69.7
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.7e-67 259.6 215 67.4
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.2e-58 228.4 141 80.9
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.2e-58 228.4 141 80.9
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 1.5e-52 209.9 139 75.5
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 7.6e-52 207.6 136 76.5
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 9.9e-52 207.2 136 76.5
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 2.2e-51 206.1 136 73.5
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 2.9e-51 205.7 136 72.8
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 3.8e-51 205.3 136 73.5
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 1.1e-50 203.8 136 72.8
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.1e-50 203.8 136 74.3
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-50 203.4 136 72.8
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.4e-50 203.4 137 73.0
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.9e-50 203.0 136 72.8
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 2.4e-50 202.6 136 75.0
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.4e-50 202.6 136 73.5
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 2.4e-50 202.6 151 69.5
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 4.2e-50 201.8 161 65.8
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 5.4e-50 201.4 136 72.1
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 5.4e-50 201.4 138 71.7
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 9.3e-50 200.7 136 70.6
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 9.3e-50 200.7 136 72.8
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.2e-49 200.3 136 71.3
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.6e-49 199.9 136 72.8
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.6e-49 199.9 136 75.0
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.1e-49 199.5 136 72.8
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.1e-49 199.5 136 72.8
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.1e-49 199.5 136 72.8
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.1e-49 199.5 136 72.1
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.7e-49 199.1 138 71.0
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.7e-49 199.1 151 67.5
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 2.7e-49 199.1 151 70.9
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 2.7e-49 199.1 151 67.5
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 6.0e-49 198.0 133 72.2
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 6.0e-49 198.0 228 51.8
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.0e-49 198.0 136 72.1
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.0e-49 198.0 136 72.1
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 6.0e-49 198.0 136 70.6
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 6.0e-49 198.0 148 68.9
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 7.9e-49 197.6 151 70.2
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.0e-48 197.2 136 72.8
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.3e-48 196.8 136 69.9
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 1.3e-48 196.8 151 69.5
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 1.8e-48 196.4 136 69.9
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.8e-48 196.4 138 69.6
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.8e-48 196.4 138 68.8
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.8e-48 196.4 151 66.2
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.8e-48 196.4 136 72.8
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 2.3e-48 196.1 151 66.2
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 3.0e-48 195.7 136 69.9
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 3.0e-48 195.7 136 69.1
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 3.9e-48 195.3 136 73.5
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 3.9e-48 195.3 136 71.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 3.9e-48 195.3 133 71.4
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 6.7e-48 194.5 138 69.6
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.1e-47 193.7 133 70.7
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.5e-47 193.4 136 72.1
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.9e-47 193.0 151 65.6
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.5e-47 192.6 138 66.7
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 4.3e-47 191.8 136 70.6
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 7.4e-47 191.0 136 68.4
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 7.4e-47 191.0 136 67.6
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 9.6e-47 190.7 138 64.5
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 9.6e-47 190.7 134 67.9
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.3e-46 190.3 133 71.4
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.3e-46 190.3 136 69.1
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.6e-46 189.9 136 66.9
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 2.8e-46 189.1 136 68.4
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.7e-46 188.7 137 67.9
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 3.7e-46 188.7 137 67.9
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 3.7e-46 188.7 136 66.9
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 3.7e-46 188.7 127 71.7
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 4.8e-46 188.3 127 71.7
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 4.8e-46 188.3 136 66.9
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 6.2e-46 188.0 137 67.2
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 8.1e-46 187.6 151 64.2
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 8.1e-46 187.6 136 67.6
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.1e-45 187.2 136 66.2
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.4e-45 186.8 136 66.9
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 1.4e-45 186.8 136 66.9
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.4e-45 186.8 149 65.1
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.8e-45 186.4 136 66.9
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.4e-45 186.0 136 64.7
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 2.4e-45 186.0 132 67.4
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 3.1e-45 185.7 136 66.2
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.1e-45 185.7 132 68.2
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 4.0e-45 185.3 148 62.2
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 9.0e-45 184.1 136 64.7
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 1.2e-44 183.7 136 67.6
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 1.5e-44 183.3 132 67.4
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.5e-44 183.3 127 70.9
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.5e-44 183.3 136 64.7
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 3.4e-44 182.2 131 67.2
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 3.4e-44 182.2 131 67.2
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 7.6e-44 181.0 151 60.9
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 9.9e-44 180.6 131 66.4
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 9.9e-44 180.6 131 66.4
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 9.9e-44 180.6 131 66.4
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 9.9e-44 180.6 136 64.0
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 4.9e-43 178.3 133 66.9
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 6.4e-43 177.9 129 67.4
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 6.4e-43 177.9 127 67.7
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 6.4e-43 177.9 136 64.0
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 8.4e-43 177.6 136 63.2
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 8.4e-43 177.6 169 56.8
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.1e-42 177.2 123 69.9
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-42 176.8 208 50.0
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 1.9e-42 176.4 136 64.7
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 2.4e-42 176.0 136 61.0
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.4e-42 176.0 133 65.4
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 5.5e-42 174.9 136 65.4
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.6e-41 173.3 117 74.4
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 2.1e-41 172.9 151 60.3
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 2.1e-41 172.9 136 59.6
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 3.5e-41 172.2 139 59.0
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.6e-41 171.8 136 63.2
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 7.9e-41 171.0 136 64.7
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 3.9e-40 168.7 142 58.5
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 5.1e-40 168.3 137 58.4
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.3e-39 165.6 136 64.7
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 3.3e-39 165.6 142 56.3
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 7.4e-39 164.5 151 57.6
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.6e-38 163.3 151 55.6
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 8.2e-38 161.0 107 72.0
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 5.3e-37 158.3 107 71.0
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.9e-37 157.9 107 70.1
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.0e-36 156.4 107 70.1
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 5.8e-36 154.8 192 47.9
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.6e-36 154.5 106 70.8
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.2e-35 152.9 106 69.8
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 4.9e-35 151.8 107 67.3
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.8e-32 143.3 135 55.6
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.8e-32 143.3 135 55.6
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 3.9e-32 142.1 138 55.1
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 7.4e-31 137.9 108 63.9
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.2e-30 136.3 133 52.6
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 8.2e-30 134.4 127 53.5
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 2.4e-29 132.9 141 51.1
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 2.2e-27 126.3 136 47.8
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 5.5e-26 121.7 131 49.6
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 7.2e-26 121.3 131 50.4
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 5.1e-24 115.2 126 50.0
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 1.1e-13 80.9 67 62.7
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 6.5e-11 71.6 49 67.3
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.4e-08 63.9 88 39.8


User provided reference genes

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