Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 0.0e+00 2001.5 1234 100.0
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 0.0e+00 1141.3 1248 63.9
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 9.0e-296 1020.8 1269 59.4
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.1e-256 889.0 1257 48.6
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.3e-251 873.2 1249 48.4
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.9e-134 483.8 1074 44.2
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.7e-116 425.2 1350 38.5
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.3e-97 361.7 1327 38.7
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 5.2e-94 350.5 1346 36.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 6.8e-94 350.1 1097 35.9
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 8.3e-92 343.2 1322 32.7
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.9e-91 342.0 1042 40.0
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.0e-89 336.3 1328 34.9
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.3e-89 335.9 1031 39.7
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 3.9e-89 334.3 1312 38.0
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.9e-89 334.3 1121 36.6
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.1e-88 332.8 1046 39.0
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.5e-88 332.4 590 39.3
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.3e-88 331.3 1020 37.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.3e-88 330.9 1042 39.5
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.6e-87 328.9 1044 35.6
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 2.8e-87 328.2 807 35.7
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 5.2e-86 323.9 1361 29.5
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.5e-85 322.4 1021 36.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.7e-84 318.9 1391 34.5
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 6.4e-84 317.0 1343 34.8
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.3e-84 316.6 1027 39.1
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 8.3e-84 316.6 1330 35.6
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.1e-83 316.2 1308 34.2
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.1e-83 314.3 1029 38.9
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 9.2e-83 313.2 1049 32.0
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.2e-83 313.2 1323 36.6
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.6e-82 312.4 1312 36.8
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 2.1e-82 312.0 1319 35.8
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.0e-81 309.7 1026 38.9
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 5.1e-81 307.4 1317 34.2
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 7.3e-80 303.5 798 32.6
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 9.5e-80 303.1 1309 33.8
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.1e-78 299.7 806 33.1
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.4e-78 299.3 1304 34.5
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 9.9e-77 293.1 1327 35.6
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.3e-76 292.7 1314 37.1
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.3e-76 292.7 1129 33.4
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.7e-76 292.4 1083 36.1
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 3.7e-76 291.2 1141 38.7
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 4.9e-76 290.8 1319 36.5
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.9e-76 290.8 579 39.4
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 6.4e-76 290.4 821 33.9
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.9e-75 288.9 1070 30.2
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.2e-74 286.2 1308 35.6
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 7.8e-74 283.5 1312 35.3
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.8e-74 283.5 1342 28.5
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.3e-73 282.7 825 33.3
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 2.3e-73 282.0 834 33.5
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 5.6e-72 277.3 1333 35.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.2e-71 276.2 1328 33.1
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.1e-70 273.1 810 33.1
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 4.0e-70 271.2 1175 29.9
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 6.8e-70 270.4 1324 33.5
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.5e-69 269.2 577 36.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.7e-68 265.8 1128 30.2
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 4.9e-68 264.2 1035 33.9
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.4e-68 263.8 860 39.0
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-67 263.1 860 38.6
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.6e-66 259.2 1250 34.0
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 2.7e-66 258.5 1388 26.5
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.8e-66 256.9 487 40.7
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.7e-65 253.4 1307 33.4
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 9.6e-64 250.0 1020 34.7
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.1e-63 248.8 691 34.0
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.1e-62 246.5 1122 34.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 9.0e-62 243.4 805 31.8
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 2.0e-61 242.3 796 32.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 3.4e-61 241.5 1314 30.4
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 9.9e-61 240.0 1303 31.4
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.3e-60 239.6 592 35.5
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 6.4e-60 237.3 1316 30.9
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 8.4e-60 236.9 794 31.5
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.9e-59 235.7 599 35.4
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-59 235.0 1322 31.2
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.4e-59 234.2 1297 35.0
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 5.4e-59 234.2 430 39.3
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.0e-57 229.9 814 31.1
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 3.0e-57 228.4 1295 32.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 3.3e-56 224.9 843 31.8
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.3e-55 223.0 770 31.9
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.3e-55 223.0 821 31.5
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.3e-55 223.0 1309 29.0
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.1e-55 220.3 529 35.3
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 8.1e-55 220.3 639 31.8
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.4e-54 219.5 590 34.6
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 5.3e-54 217.6 1292 28.9
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.6e-53 215.3 613 34.9
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.6e-53 215.3 613 34.9
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.4e-53 214.9 810 30.6
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 4.5e-53 214.5 1301 34.4
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.7e-52 212.6 593 33.1
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.1e-51 209.9 1285 29.3
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.9e-51 209.1 807 32.3
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.9e-51 209.1 805 29.2
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.3e-51 206.8 805 31.1
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.2e-50 206.5 1135 35.5
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.6e-50 206.1 1174 27.2
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.1e-50 205.7 799 39.3
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 4.6e-50 204.5 1299 32.3
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 7.9e-50 203.8 806 29.8
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.3e-49 203.0 1175 26.4
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 2.3e-49 202.2 794 39.2
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 8.7e-49 200.3 818 30.1
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.5e-48 199.5 609 34.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.3e-48 198.0 589 32.4
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 5.6e-48 197.6 607 34.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.1e-47 195.7 1153 31.7
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.8e-47 195.3 573 34.4
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 8.1e-47 193.7 574 34.3
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 8.1e-47 193.7 574 34.3
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.1e-46 193.4 574 34.1
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 2.4e-46 192.2 574 34.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 4.0e-46 191.4 1163 33.4
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 4.5e-45 188.0 623 32.6
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 7.6e-45 187.2 816 30.9
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.3e-44 186.4 1311 27.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.3e-43 180.3 1077 26.9
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.2e-42 179.9 1090 29.1
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.0e-41 175.3 667 30.4
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 5.1e-41 174.5 789 27.8
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 8.7e-41 173.7 614 30.3
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 4.8e-39 167.9 1384 30.6
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 8.2e-39 167.2 546 31.7
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.4e-38 165.6 398 35.4
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 4.1e-38 164.9 462 34.0
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 5.3e-38 164.5 1336 27.3
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 4.5e-37 161.4 1104 34.5
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.9e-36 158.7 787 28.7
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.9e-33 148.3 603 29.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 6.7e-33 147.5 643 29.2
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.6e-31 142.9 1282 27.9
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 4.1e-30 138.3 600 30.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.1e-27 130.2 546 30.0
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.2e-26 126.7 649 29.6
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 7.4e-24 117.5 696 26.9
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.2e-23 115.9 564 27.1
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.8e-23 115.5 638 27.9
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.7e-23 115.2 712 27.4
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 3.7e-23 115.2 608 28.5
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.2e-19 102.1 625 26.1
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-18 100.1 650 26.9
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.1e-14 87.0 555 26.3
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 3.1e-14 85.5 618 26.5
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 4.1e-14 85.1 526 25.1
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 9.4e-11 73.9 563 27.4
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 4.7e-10 71.6 950 31.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.3e-09 69.3 605 24.3
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.4e-08 64.3 323 29.1
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.7e-07 63.2 465 24.9


User provided reference genes

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