Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 6.9e-221 770.4 403 100.0
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 5.5e-194 681.0 403 85.9
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.0e-191 672.5 403 83.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 2.8e-190 668.7 403 84.4
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 9.7e-183 643.7 403 82.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 8.2e-174 614.0 407 77.6
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 7.0e-173 610.9 403 76.7
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.5e-172 608.2 406 76.6
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.0e-171 607.1 404 74.8
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 5.0e-171 604.7 404 76.0
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.5e-171 604.4 403 74.4
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 6.5e-171 604.4 403 74.4
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.2e-170 601.7 398 77.6
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.1e-169 599.4 404 75.5
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.7e-169 598.2 403 73.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.3e-168 595.9 405 75.3
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 3.0e-168 595.5 404 74.5
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 6.8e-168 594.3 404 74.3
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.4e-167 592.0 409 74.3
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 5.7e-167 591.3 418 70.1
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 9.8e-167 590.5 404 73.5
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.3e-166 590.1 409 74.1
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 1.3e-166 590.1 403 73.7
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.2e-166 589.3 404 74.8
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 4.8e-166 588.2 407 72.7
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 6.3e-166 587.8 406 73.4
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 6.3e-166 587.8 406 73.4
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.3e-166 587.8 409 73.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.1e-165 587.0 409 73.6
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.8e-165 586.3 409 73.8
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 3.1e-165 585.5 402 74.6
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 5.4e-165 584.7 407 72.7
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 5.4e-165 584.7 407 72.7
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 7.0e-165 584.3 405 72.8
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 7.0e-165 584.3 403 72.5
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.6e-164 583.2 409 72.9
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 2.0e-164 582.8 406 73.6
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.5e-164 582.0 409 73.1
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 5.9e-164 581.3 404 72.8
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 7.7e-164 580.9 404 72.3
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.3e-163 580.1 398 72.9
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 1.7e-163 579.7 406 72.9
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 3.8e-163 578.6 409 72.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 5.0e-163 578.2 404 72.8
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 1.5e-162 576.6 406 72.4
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.2e-162 575.5 402 73.4
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 4.2e-162 575.1 399 72.7
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.5e-162 574.7 409 72.4
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 7.2e-162 574.3 404 72.5
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 9.5e-162 573.9 408 71.3
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 3.6e-161 572.0 403 71.2
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.6e-161 572.0 406 71.9
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.6e-161 572.0 405 71.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 6.1e-161 571.2 398 75.1
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.4e-160 570.1 406 72.4
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.4e-160 570.1 400 73.2
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.3e-160 569.3 404 72.0
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 3.0e-160 568.9 404 72.3
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 3.0e-160 568.9 399 72.9
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 5.2e-160 568.2 411 73.0
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 1.5e-159 566.6 388 73.2
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.0e-159 566.2 406 71.9
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 4.4e-159 565.1 400 73.2
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 5.7e-159 564.7 399 71.2
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 7.5e-159 564.3 404 70.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.3e-158 563.5 405 71.1
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.3e-158 563.5 450 66.7
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.7e-158 563.1 404 72.5
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.4e-157 560.1 401 72.1
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.4e-157 559.3 398 72.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 9.2e-157 557.4 401 71.3
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 9.2e-157 557.4 410 70.7
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.2e-156 557.0 400 70.5
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 3.5e-156 555.4 406 70.2
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 4.5e-156 555.1 405 73.1
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 4.5e-156 555.1 400 69.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 7.7e-156 554.3 406 69.7
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.7e-155 553.1 403 71.7
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.3e-155 552.7 406 71.2
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 8.6e-155 550.8 401 71.1
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.9e-154 549.7 406 70.0
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.9e-154 549.7 401 70.1
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 3.3e-154 548.9 406 69.5
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 4.3e-154 548.5 406 69.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 4.3e-154 548.5 402 72.4
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 5.6e-154 548.1 402 71.1
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 7.3e-154 547.7 453 65.1
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 9.5e-154 547.4 402 70.4
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.2e-153 547.0 406 69.2
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.2e-153 547.0 401 69.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.8e-153 545.8 406 69.0
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.6e-153 545.4 405 68.1
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.7e-153 545.0 406 70.4
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 1.4e-152 543.5 439 64.5
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 4.0e-152 542.0 399 69.2
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 5.2e-152 541.6 406 68.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 9.8e-151 537.3 406 68.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.8e-151 537.3 429 65.7
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.7e-150 536.6 406 66.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.9e-150 535.8 412 68.2
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.9e-150 535.8 403 69.5
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.9e-150 535.8 403 69.5
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.4e-149 533.5 404 67.6
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.8e-149 533.1 443 65.5
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 2.4e-149 532.7 403 68.7
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.2e-148 530.4 403 68.5
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.7e-147 526.6 401 66.3
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 8.6e-147 524.2 406 66.5
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 5.6e-146 521.5 406 66.3
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.8e-144 516.5 407 67.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 8.9e-144 514.2 403 65.5
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.2e-142 509.6 403 64.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 2.2e-142 509.6 403 67.0
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.9e-142 508.4 403 67.2
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 6.6e-139 498.0 403 64.8
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 2.5e-138 496.1 412 64.6
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.1e-136 490.7 400 63.5
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 9.2e-133 477.6 374 66.3
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.4e-125 453.8 519 50.5
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.4e-125 453.8 375 64.0
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 5.4e-125 451.8 333 69.4
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.9e-122 443.4 336 67.3
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.3e-118 430.6 293 74.4
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 6.2e-113 411.8 439 53.8
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 4.5e-111 405.6 404 56.7
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.8e-111 405.2 403 52.9
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 7.1e-109 398.3 442 53.6
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 8.7e-107 391.3 405 51.4
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 8.7e-107 391.3 405 51.4
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 7.6e-95 351.7 394 49.2
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 2.5e-90 336.7 406 47.5
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.2e-86 323.6 400 50.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 4.6e-84 315.8 403 48.6
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.4e-77 294.3 203 73.9
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.8e-67 258.5 363 43.5
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 3.5e-63 246.5 425 37.6
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 1.6e-60 237.7 278 51.1
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.7e-58 229.2 299 43.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-53 214.9 151 74.2
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.2e-45 185.7 147 71.4
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 5.4e-32 142.9 100 72.0
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 8.9e-27 125.6 103 59.2
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.2e-25 120.9 128 52.3
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.2e-25 120.9 411 28.2
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.7e-22 111.3 93 63.4
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-20 104.8 79 73.4
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.7e-20 103.2 73 71.2
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.8e-19 101.3 82 65.9
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.7e-17 93.6 68 66.2
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.7e-17 93.6 69 69.6
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.1e-16 92.0 436 25.7
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 7.1e-16 89.4 430 25.3
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 9.2e-16 89.0 378 26.5
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 3.5e-15 87.0 59 69.5
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 4.0e-11 73.6 62 69.4
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.9e-09 66.6 55 63.6
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.2e-07 62.0 86 44.2
VMungo0464G1857 Vigna mungo HOM05D004576 ORTHO05D005321 1.3e-06 58.5 41 78.0


User provided reference genes

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